Species

KNApSAcK Entry

Organism name Sambucus nigra
Genus Sambucus
Family Adoxaceae
Kingdom Plantae

NCBI taxonomy

Entry

Linked NCBI taxonomy name Sambucus nigra
Linked NCBI taxonomy ID 4202
Linked level species

Family

Family in NCBI taxonomy Adoxaceae
ID 4206

Kingdom (Superkingdom)

Kingdom (Superkingdom) in NCBI taxonomy Viridiplantae
ID 33090

Plant class

Plant class asterids
ID 71274

Natural Activity

List (20)

Species Activity
Sambucus nigra L. Alterative
Sambucus nigra L. Analgesic
Sambucus nigra L. Antiinflammatory
Sambucus nigra L. Antipyretic
Sambucus nigra L. Antiviral
Sambucus nigra L. Bronchodilator
Sambucus nigra L. Carminative
Sambucus nigra L. Depurative
Sambucus nigra L. Diaphoretic
Sambucus nigra L. Diuretic
Sambucus nigra L. Emetic
Sambucus nigra L. Emollient
Sambucus nigra L. Expectorant
Sambucus nigra L. Lactagogue
Sambucus nigra L. Laxative
Sambucus nigra L. Mcolytic
Sambucus nigra L. Phagocytotic
Sambucus nigra L. Secretagogue
Sambucus nigra L. Stimulant
Sambucus nigra L. Stomachic

Metabolite list (14)

KNApSAcK ID name ChEMBL link CTD link # of proteins in
ChEMBL interaction
/ related OMIM
/ related KEGG DISEASE
# of genes in
CTD interaction
/ related diseases
KCF-S
cluster
phytochemical
cluster
figure
C00005506 External link 512 Rhamnetin 3-glucoside
C00006673 External link 512 Cyanidin 3-sambubioside-5-glucoside
No. 5 No. 15
C00000659 External link 512 Medioresinol
/ (+)-Medioresinol
CHEMBL376507
CHEMBL513023
2 / 1 / 1 No. 38 No. 21
C00007190 External link 512 (+)-Pinoresinol
CHEMBL267963
CHEMBL487611
CHEMBL460862
C103298
7 / 5 / 6 No. 38 No. 21
C00037273 External link 512 Holocalin
No. 45 No. 72
C00001460 External link 512 Zierin
No. 45 No. 72
C00001454 External link 512 Prunasin
/ (-)-Prunasin
/ (2R)-Prunasin
/ (-)-(2R)-Prunasin
CHEMBL1778417
No. 45 No. 72
C00034206 External link 512 Sambunigrin
/ (S)-Prunasin
/ (2S)-Sambunigrin
CHEMBL1778417
No. 45 No. 72
C00003647 External link 512 Campesterol
/ 24alpha-Methylcholesterol
/ (24R)24-Methylcholest-5-en-3beta-ol
CHEMBL520535
CHEMBL485421
CHEMBL1836653
C021273
No. 53 No. 11
C00031877 External link 512 Icariside F2
/ Benzyl beta-D-Apiofuranosyl-(1->6)-O-beta-D-glucopyranoside
No. 267
C00003772 External link 512 Flavoxanthin
No. 664 No. 59
C00000602 External link 512 (+)-Lariciresinol
CHEMBL518421
2 / 1 / 1 No. 700 No. 21
C00002718 External link 512 1-Caffeoyl-beta-D-glucose
CHEMBL482242
No. 1127 No. 6
C00037426 External link 512 L-Mandelic acid
/ L-(+)-Mandelic acid
CHEMBL58910
CHEMBL292411
CHEMBL1609
12 / 15 / 11 No. 2481

Human Protein / Gene in interactions

21 ChEMBL Protein in interactions

accession description class description KNApSAcK metabolite in interactions # of diseases
(OMIM / KEGG)
P10635 Cytochrome P450 2D6 Cytochrome P450 2D6 C00000602 C00000659 1 / 0
P08684 Cytochrome P450 3A4 Cytochrome P450 3A4 C00000602 C00000659 0 / 1
P37231 Peroxisome proliferator-activated receptor gamma NR1C3 C00007190 5 / 3
P35354 Prostaglandin G/H synthase 2 Oxidoreductase C00007190 0 / 3
P04406 Glyceraldehyde-3-phosphate dehydrogenase Enzyme C00037426 0 / 0
Q03181 Peroxisome proliferator-activated receptor delta NR1C2 C00007190 0 / 0
P02545 Prelamin-A/C Unclassified protein C00037426 11 / 10
P14902 Indoleamine 2,3-dioxygenase 1 Enzyme C00037426 0 / 0
P84022 Mothers against decapentaplegic homolog 3 Unclassified protein C00037426 2 / 0
P08107 Heat shock 70 kDa protein 1A/1B Unclassified protein C00037426 0 / 0
P09917 Arachidonate 5-lipoxygenase Oxidoreductase C00007190 0 / 0
P35236 Tyrosine-protein phosphatase non-receptor type 7 Tyr C00037426 0 / 0
Q96QE3 ATPase family AAA domain-containing protein 5 Unclassified protein C00007190 0 / 0
P18031 Tyrosine-protein phosphatase non-receptor type 1 Tyr C00037426 0 / 0
P98170 E3 ubiquitin-protein ligase XIAP Other cytosolic protein C00037426 1 / 1
O75164 Lysine-specific demethylase 4A Enzyme C00037426 0 / 0
Q07869 Peroxisome proliferator-activated receptor alpha NR1C1 C00007190 0 / 0
Q9UBT6 DNA polymerase kappa Enzyme C00037426 0 / 0
P11142 Heat shock cognate 71 kDa protein Unclassified protein C00037426 0 / 0
O75874 Isocitrate dehydrogenase [NADP] cytoplasmic Enzyme C00037426 1 / 0
Q9H0H5 Rac GTPase-activating protein 1 Unclassified protein C00007190 0 / 0

Related Diseases

Diseases related to proteins in ChEMBL interactions

OMIM (20)

OMIM preferred title UniProt
%606641 Body mass index; bmi P37231
#115200 Cardiomyopathy, dilated, 1a; cmd1a P02545
#212112 Cardiomyopathy, dilated, with hypergonadotropic hypogonadism P02545
#609338 Carotid intimal medial thickness 1 P37231
#605588 Charcot-marie-tooth disease, axonal, type 2b1; cmt2b1 P02545
#114500 Colorectal cancer; crc P84022
#608902 Drug metabolism, poor, cyp2d6-related P10635
#181350 Emery-dreifuss muscular dystrophy 2, autosomal dominant; edmd2 P02545
#137800 Glioma susceptibility 1; glm1 O75874
P37231
#610140 Heart-hand syndrome, slovenian type P02545
#176670 Hutchinson-gilford progeria syndrome; hgps P02545
#151660 Lipodystrophy, familial partial, type 2; fpld2 P02545
#604367 Lipodystrophy, familial partial, type 3; fpld3 P37231
#613795 Loeys-dietz syndrome, type 3; lds3 P84022
#300635 Lymphoproliferative syndrome, x-linked, 2; xlp2 P98170
#248370 Mandibuloacral dysplasia with type a lipodystrophy; mada P02545
#613205 Muscular dystrophy, congenital, lmna-related P02545
#159001 Muscular dystrophy, limb-girdle, type 1b; lgmd1b P02545
#601665 Obesity P37231
#275210 Restrictive dermopathy, lethal P02545

KEGG DISEASE (17)

KEGG name UniProt
H00264 Charcot-Marie-Tooth disease (CMT) P02545 (related)
H00294 Dilated cardiomyopathy (DCM) P02545 (related)
H00420 Familial partial lipodystrophy (FPL) P02545 (related)
P37231 (related)
H00563 Emery-Dreifuss muscular dystrophy P02545 (related)
H00590 Congenital muscular dystrophies (CMD/MDC) P02545 (related)
H00593 Limb-girdle muscular dystrophy (LGMD) P02545 (related)
H00601 Hutchinson-Gilford progeria syndrome P02545 (related)
H00663 Restrictive dermopathy P02545 (related)
H00665 Mandibuloacral dysplasia P02545 (related)
H01216 Left ventricular noncompaction (LVNC) P02545 (related)
H00036 Osteosarcoma P08684 (marker)
H00017 Esophageal cancer P35354 (related)
H00025 Penile cancer P35354 (related)
H00046 Cholangiocarcinoma P35354 (related)
H00032 Thyroid cancer P37231 (related)
H00409 Type II diabetes mellitus P37231 (related)
H00107 Other well-defined immunodeficiency syndromes P98170 (related)