Species

KNApSAcK Entry

Organism name Nandina domestica
Genus Nandina
Family Berberidaceae
Kingdom Plantae

NCBI taxonomy

Entry

Linked NCBI taxonomy name Nandina domestica
Linked NCBI taxonomy ID 41776
Linked level species

Family

Family in NCBI taxonomy Berberidaceae
ID 41773

Kingdom (Superkingdom)

Kingdom (Superkingdom) in NCBI taxonomy Viridiplantae
ID 33090

Plant class

Plant class eudicotyledons
ID 71240

Metabolite list (12)

KNApSAcK ID name ChEMBL link CTD link # of proteins in
ChEMBL interaction
/ related OMIM
/ related KEGG DISEASE
# of genes in
CTD interaction
/ related diseases
KCF-S
cluster
phytochemical
cluster
figure
C00001869 External link 512 Isoboldine
/ (S)-Isoboldine
CHEMBL462880
19 / 22 / 55 No. 20 No. 4
C00001443 External link 512 p-Glucosyloxymandelonitrile
No. 45 No. 72
C00001874 External link 512 Neprotin
/ Neprotine
/ Yatrorizine
/ Jatrorrhizine
CHEMBL251055
C055785
14 / 27 / 20 1 / 0 No. 155 No. 4
C00001819 External link 512 Thalsine
/ Majarine
/ Berberine
/ Umbellatin
CHEMBL295124
D001599
19 / 25 / 26 30 / 19 No. 155 No. 4
C00024667 External link 512 Columbamine
/ Dehydroisocorypalmine
CHEMBL400345
C055786
1 / 0 / 1 8 / 1 No. 155 No. 4
C00024668 External link 512 YHL II
/ Coptisine
CHEMBL362071
C034384
No. 155 No. 4
C00027159 External link 512 Depiline
/ Palmatine
/ Berbericinine
/ O,O-Dimethyldemethyleneberberine
CHEMBL206106
C005413
8 / 13 / 13 8 / 0 No. 155 No. 4
C00025629 External link 512 Sinoacutine
/ (-)-Sinoacutine
/ (-)-Salutaridine
CHEMBL402782
CHEMBL404097
3 / 4 / 2 No. 426 No. 4
C00038104 External link 512 (R)-(+)-Carnegine
CHEMBL1186208
CHEMBL1192717
No. 1686 No. 4
C00027843 External link 512 Terrestribisamide
/ (E,E)-Terrestribisamide
CHEMBL1088758
No. 3061
C00038102 External link 512 (E,Z)-Terrestribisamide
CHEMBL1088758
No. 3061
C00038108 External link 512 (Z,Z)-Terrestribisamide
CHEMBL1088758
No. 3061

Human Protein / Gene in interactions

42 ChEMBL Protein in interactions

accession description class description KNApSAcK metabolite in interactions # of diseases
(OMIM / KEGG)
P08684 Cytochrome P450 3A4 Cytochrome P450 3A4 C00001819 C00001869 C00001874 C00024667 C00027159 0 / 1
P33261 Cytochrome P450 2C19 Cytochrome P450 2C19 C00001819 C00001869 C00027159 1 / 1
P11712 Cytochrome P450 2C9 Cytochrome P450 2C9 C00001819 C00001869 C00027159 0 / 1
P10635 Cytochrome P450 2D6 Cytochrome P450 2D6 C00001819 C00001869 C00027159 1 / 0
P10636 Microtubule-associated protein tau Unclassified protein C00001819 C00001869 C00001874 4 / 3
O00255 Menin Unclassified protein C00001819 C00001869 2 / 5
B2RXH2 Lysine-specific demethylase 4E Enzyme C00001869 C00001874 0 / 0
Q03164 Histone-lysine N-methyltransferase 2A Enzyme C00001819 C00001869 1 / 2
Q13951 Core-binding factor subunit beta Unclassified protein C00001819 C00001869 0 / 1
Q16637 Survival motor neuron protein Unclassified protein C00001819 C00001874 4 / 1
P02545 Prelamin-A/C Unclassified protein C00001874 C00027159 11 / 10
P00352 Retinal dehydrogenase 1 Enzyme C00001819 C00001869 0 / 0
Q16665 Hypoxia-inducible factor 1-alpha Transcription Factor C00001819 C00027159 0 / 0
Q01196 Runt-related transcription factor 1 Unclassified protein C00001819 C00001869 1 / 4
P05177 Cytochrome P450 1A2 Cytochrome P450 1A2 C00001819 C00027159 0 / 0
Q9NR56 Muscleblind-like protein 1 Unclassified protein C00001874 1 / 0
P24941 Cyclin-dependent kinase 2 Cdc2 C00025629 0 / 0
P39748 Flap endonuclease 1 Enzyme C00001874 0 / 0
Q9NPD5 Solute carrier organic anion transporter family member 1B3 Electrochemical transporter C00001819 1 / 0
O94782 Ubiquitin carboxyl-terminal hydrolase 1 Enzyme C00027159 0 / 0
P00734 Prothrombin S1A C00025629 4 / 2
P16473 Thyrotropin receptor Glycohormone receptor C00001819 3 / 2
Q99714 3-hydroxyacyl-CoA dehydrogenase type-2 Enzyme C00001869 3 / 3
P15428 15-hydroxyprostaglandin dehydrogenase [NAD(+)] Enzyme C00001869 2 / 2
P35372 Mu-type opioid receptor Opioid receptor C00025629 0 / 0
P55210 Caspase-7 C14 C00001869 0 / 0
P29466 Caspase-1 C14 C00001869 0 / 0
P10253 Lysosomal alpha-glucosidase Hydrolase C00001874 1 / 1
Q9UNA4 DNA polymerase iota Enzyme C00001874 0 / 0
P27695 DNA-(apurinic or apyrimidinic site) lyase Enzyme C00001869 0 / 0
P04062 Glucosylceramidase Enzyme C00001874 6 / 4
O14746 Telomerase reverse transcriptase Enzyme C00001819 5 / 5
Q9UBT6 DNA polymerase kappa Enzyme C00001869 0 / 0
P06746 DNA polymerase beta Enzyme C00001874 0 / 0
P46063 ATP-dependent DNA helicase Q1 Enzyme C00001869 0 / 0
Q96KQ7 Histone-lysine N-methyltransferase EHMT2 Enzyme C00001874 0 / 0
Q12809 Potassium voltage-gated channel subfamily H member 2 KCNH, Kv10-12.x (Ether-a-go-go) C00001819 2 / 2
O94956 Solute carrier organic anion transporter family member 2B1 Unclassified protein C00001819 0 / 0
Q9Y6L6 Solute carrier organic anion transporter family member 1B1 Electrochemical transporter C00001819 1 / 0
P04637 Cellular tumor antigen p53 Transcription Factor C00001869 7 / 37
O94925 Glutaminase kidney isoform, mitochondrial Enzyme C00001874 0 / 0
P43351 DNA repair protein RAD52 homolog Unclassified protein C00001874 0 / 0

41 Gene in CTD interactions

gene gene name gene description KNApSAcK metabolite in interactions
332 BIRC5, API4, EPR-1 baculoviral IAP repeat containing 5 C00001819 C00001874 C00027159
4313 MMP2, CLG4, CLG4A, MMP-II, MONA, TBE-1 matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) (EC:3.4.24.24) C00001819 C00024667
6347 CCL2, GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1, SCYA2, SMC-CF chemokine (C-C motif) ligand 2 C00001819 C00027159
1021 CDK6, PLSTIRE cyclin-dependent kinase 6 (EC:2.7.11.22) C00001819 C00024667
3576 IL8, CXCL8, GCP-1, GCP1, LECT, LUCT, LYNAP, MDNCF, MONAP, NAF, NAP-1, NAP1 interleukin 8 C00001819 C00027159
836 CASP3, CPP32, CPP32B, SCA-1 caspase 3, apoptosis-related cysteine peptidase (EC:3.4.22.56) C00001819
6352 CCL5, D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228, eoCP chemokine (C-C motif) ligand 5 C00027159
7422 VEGFA, MVCD1, VEGF, VPF vascular endothelial growth factor A C00027159
1003 CDH5, 7B4, CD144 cadherin 5, type 2 (vascular endothelium) C00024667
6351 CCL4, ACT2, AT744.1, G-26, HC21, LAG-1, LAG1, MIP-1-beta, MIP1B, MIP1B1, SCYA2, SCYA4 chemokine (C-C motif) ligand 4 C00027159
1437 CSF2, GMCSF colony stimulating factor 2 (granulocyte-macrophage) C00024667
2048 EPHB2, CAPB, DRT, EK5, EPHT3, ERK, Hek5, PCBC, Tyro5 EPH receptor B2 (EC:2.7.10.1) C00024667
9500 MAGED1, DLXIN-1, NRAGE melanoma antigen family D, 1 C00024667
6348 CCL3, G0S19-1, LD78ALPHA, MIP-1-alpha, MIP1A, SCYA3 chemokine (C-C motif) ligand 3 C00027159
64321 SOX17, VUR3 SRY (sex determining region Y)-box 17 C00024667
6774 STAT3, APRF, HIES signal transducer and activator of transcription 3 (acute-phase response factor) C00024667
196 AHR, bHLHe76 aryl hydrocarbon receptor C00001819
581 BAX, BCL2L4 BCL2-associated X protein C00001819
596 BCL2, Bcl-2, PPP1R50 B-cell CLL/lymphoma 2 C00001819
598 BCL2L1, BCL-XL/S, BCL2L, BCLX, BCLXL, BCLXS, Bcl-X, PPP1R52, bcl-xL, bcl-xS BCL2-like 1 C00001819
3570 IL6R, CD126, IL-6R-1, IL-6RA, IL6Q, IL6RA, IL6RQ, gp80 interleukin 6 receptor C00027159
841 CASP8, ALPS2B, CAP4, Casp-8, FLICE, MACH, MCH5 caspase 8, apoptosis-related cysteine peptidase (EC:3.4.22.61) C00001819
842 CASP9, APAF-3, APAF3, ICE-LAP6, MCH6, PPP1R56 caspase 9, apoptosis-related cysteine peptidase (EC:3.4.22.62) C00001819
595 CCND1, BCL1, D11S287E, PRAD1, U21B31 cyclin D1 C00001819
894 CCND2, KIAK0002 cyclin D2 C00001819
898 CCNE1, CCNE cyclin E1 C00001819
1017 CDK2, p33(CDK2) cyclin-dependent kinase 2 (EC:2.7.11.22) C00001819
1019 CDK4, CMM3, PSK-J3 cyclin-dependent kinase 4 (EC:2.7.11.22) C00001819
1026 CDKN1A, CAP20, CDKN1, CIP1, MDA-6, P21, SDI1, WAF1, p21CIP1 cyclin-dependent kinase inhibitor 1A (p21, Cip1) C00001819
1027 CDKN1B, CDKN4, KIP1, MEN1B, MEN4, P27KIP1 cyclin-dependent kinase inhibitor 1B (p27, Kip1) C00001819
54205 CYCS, CYC, HCS, THC4 cytochrome c, somatic C00001819
1543 CYP1A1, AHH, AHRR, CP11, CYP1, P1-450, P450-C, P450DX cytochrome P450, family 1, subfamily A, polypeptide 1 (EC:1.14.14.1) C00001819
355 FAS, ALPS1A, APO-1, APT1, CD95, FAS1, FASTM, TNFRSF6 Fas cell surface death receptor C00001819
356 FASLG, ALPS1B, APT1LG1, APTL, CD178, CD95-L, CD95L, FASL, TNFSF6 Fas ligand (TNF superfamily, member 6) C00001819
3553 IL1B, IL-1, IL1-BETA, IL1F2 interleukin 1, beta C00001819
5027 P2RX7, P2X7 purinergic receptor P2X, ligand-gated ion channel, 7 C00001819
142 PARP1, ADPRT, ADPRT_1, ADPRT1, ARTD1, PARP, PARP-1, PPOL, pADPRT-1 poly (ADP-ribose) polymerase 1 (EC:2.4.2.30) C00001819
6476 SI sucrase-isomaltase (alpha-glucosidase) (EC:3.2.1.10 3.2.1.48) C00001819
7124 TNF, DIF, TNF-alpha, TNFA, TNFSF2 tumor necrosis factor C00001819
7157 TP53, BCC7, LFS1, P53, TRP53 tumor protein p53 C00001819
7185 TRAF1, EBI6, MGC:10353 TNF receptor-associated factor 1 C00001819

Related Diseases

Diseases related to proteins in ChEMBL interactions

OMIM (60)

OMIM preferred title UniProt
#300438 17-beta-hydroxysteroid dehydrogenase x deficiency Q99714
#202300 Adrenocortical carcinoma, hereditary; adcc P04637
#609135 Aplastic anemia O14746
#614740 Basal cell carcinoma, susceptibility to, 7; bcc7 P04637
#115200 Cardiomyopathy, dilated, 1a; cmd1a P02545
#212112 Cardiomyopathy, dilated, with hypergonadotropic hypogonadism P02545
#605588 Charcot-marie-tooth disease, axonal, type 2b1; cmt2b1 P02545
#119900 Digital clubbing, isolated congenital P15428
#609535 Drug metabolism, poor, cyp2c19-related P33261
#608902 Drug metabolism, poor, cyp2d6-related P10635
#613989 Dyskeratosis congenita, autosomal dominant, 2; dkca2 O14746
#181350 Emery-dreifuss muscular dystrophy 2, autosomal dominant; edmd2 P02545
#133239 Esophageal cancer P04637
#600274 Frontotemporal dementia; ftd P10636
#608013 Gaucher disease, perinatal lethal P04062
#230800 Gaucher disease, type i P04062
#230900 Gaucher disease, type ii P04062
#231000 Gaucher disease, type iii P04062
#231005 Gaucher disease, type iiic P04062
#232300 Glycogen storage disease ii P10253
#605130 Hairy elbows, short stature, facial dysmorphism, and developmental delay Q03164
#610140 Heart-hand syndrome, slovenian type P02545
#176670 Hutchinson-gilford progeria syndrome; hgps P02545
#237450 Hyperbilirubinemia, rotor type; hblrr Q9NPD5
Q9Y6L6
#145000 Hyperparathyroidism 1; hrpt1 O00255
#603373 Hyperthyroidism, familial gestational P16473
#609152 Hyperthyroidism, nonautoimmune P16473
#259100 Hypertrophic osteoarthropathy, primary, autosomal recessive, 1; phoar1 P15428
#275200 Hypothyroidism, congenital, nongoitrous, 1; chng1 P16473
#151623 Li-fraumeni syndrome 1; lfs1 P04637
#151660 Lipodystrophy, familial partial, type 2; fpld2 P02545
#613688 Long qt syndrome 2; lqt2 Q12809
#211980 Lung cancer P04637
#248370 Mandibuloacral dysplasia with type a lipodystrophy; mada P02545
#615134 Melanoma, cutaneous malignant, susceptibility to, 9; cmm9 O14746
#300705 Mental retardation, x-linked 17; mrx17 Q99714
#300220 Mental retardation, x-linked, syndromic 10; mrxs10 Q99714
#131100 Multiple endocrine neoplasia, type i; men1 O00255
#613205 Muscular dystrophy, congenital, lmna-related P02545
#159001 Muscular dystrophy, limb-girdle, type 1b; lgmd1b P02545
#160900 Myotonic dystrophy 1; dm1 Q9NR56
#260500 Papilloma of choroid plexus; cpp P04637
#168600 Parkinson disease, late-onset; pd P04062
#260540 Parkinson-dementia syndrome P10636
#172700 Pick disease of brain P10636
#601399 Platelet disorder, familial, with associated myeloid malignancy Q01196
#614390 Pregnancy loss, recurrent, susceptibility to, 2; rprgl2 P00734
#613679 Prothrombin deficiency, congenital P00734
#614742 Pulmonary fibrosis and/or bone marrow failure, telomere-related, 1; pfbmft1 O14746
#178500 Pulmonary fibrosis, idiopathic; ipf O14746
#275210 Restrictive dermopathy, lethal P02545
#609620 Short qt syndrome 1; sqt1 Q12809
#253300 Spinal muscular atrophy, type i; sma1 Q16637
#253550 Spinal muscular atrophy, type ii; sma2 Q16637
#253400 Spinal muscular atrophy, type iii; sma3 Q16637
#271150 Spinal muscular atrophy, type iv; sma4 Q16637
#275355 Squamous cell carcinoma, head and neck; hnscc P04637
#601367 Stroke, ischemic P00734
#601104 Supranuclear palsy, progressive, 1; psnp1 P10636
#188050 Thrombophilia due to thrombin defect; thph1 P00734

KEGG DISEASE (81)

KEGG name UniProt
H00033 Adrenal carcinoma O00255 (related)
P04637 (related)
H00034 Carcinoid O00255 (related)
H00045 Malignant islet cell carcinoma O00255 (related)
H00246 Primary hyperparathyroidism O00255 (related)
H01102 Pituitary adenomas O00255 (related)
H00764 Cri du chat syndrome O14746 (related)
H01132 Aplastic anemia (AA) O14746 (related)
H01299 Idiopathic pulmonary fibrosis O14746 (related)
H00022 Bladder cancer O14746 (marker)
P04637 (related)
H00024 Prostate cancer O14746 (marker)
H00223 Inherited thrombophilia P00734 (related)
H01254 Congenital prothrombin deficiency P00734 (related)
H00264 Charcot-Marie-Tooth disease (CMT) P02545 (related)
H00294 Dilated cardiomyopathy (DCM) P02545 (related)
H00420 Familial partial lipodystrophy (FPL) P02545 (related)
H00563 Emery-Dreifuss muscular dystrophy P02545 (related)
H00590 Congenital muscular dystrophies (CMD/MDC) P02545 (related)
H00593 Limb-girdle muscular dystrophy (LGMD) P02545 (related)
H00601 Hutchinson-Gilford progeria syndrome P02545 (related)
H00663 Restrictive dermopathy P02545 (related)
H00665 Mandibuloacral dysplasia P02545 (related)
H01216 Left ventricular noncompaction (LVNC) P02545 (related)
H00066 Lewy body dementia (LBD) P04062 (related)
H00126 Gaucher disease P04062 (related)
H00426 Defects in the degradation of ganglioside P04062 (related)
H00810 Progressive myoclonic epilepsy (PME) P04062 (related)
H00004 Chronic myeloid leukemia (CML) P04637 (related)
Q01196 (related)
H00005 Chronic lymphocytic leukemia (CLL) P04637 (related)
H00006 Hairy-cell leukemia P04637 (related)
H00008 Burkitt lymphoma P04637 (related)
H00009 Adult T-cell leukemia P04637 (related)
H00010 Multiple myeloma P04637 (related)
H00013 Small cell lung cancer P04637 (related)
H00014 Non-small cell lung cancer P04637 (related)
H00015 Malignant pleural mesothelioma P04637 (related)
H00016 Oral cancer P04637 (related)
P04637 (marker)
H00017 Esophageal cancer P04637 (related)
P04637 (marker)
H00018 Gastric cancer P04637 (related)
H00019 Pancreatic cancer P04637 (related)
P04637 (marker)
H00020 Colorectal cancer P04637 (related)
P04637 (marker)
H00025 Penile cancer P04637 (related)
P04637 (marker)
H00026 Endometrial Cancer P04637 (related)
H00027 Ovarian cancer P04637 (related)
H00028 Choriocarcinoma P04637 (related)
H00029 Vulvar cancer P04637 (related)
H00031 Breast cancer P04637 (related)
H00032 Thyroid cancer P04637 (related)
H00036 Osteosarcoma P04637 (related)
P08684 (marker)
H00038 Malignant melanoma P04637 (related)
H00039 Basal cell carcinoma P04637 (related)
H00040 Squamous cell carcinoma P04637 (related)
H00041 Kaposi's sarcoma P04637 (related)
H00042 Glioma P04637 (related)
P04637 (marker)
H00044 Cancer of the anal canal P04637 (related)
H00046 Cholangiocarcinoma P04637 (related)
H00047 Gallbladder cancer P04637 (related)
H00048 Hepatocellular carcinoma P04637 (related)
H00055 Laryngeal cancer P04637 (related)
P04637 (marker)
H00881 Li-Fraumeni syndrome P04637 (related)
H01007 Choroid plexus papilloma P04637 (related)
H00021 Renal cell carcinoma P04637 (marker)
H00069 Glycogen storage diseases (GSD) P10253 (related)
H00058 Amyotrophic lateral sclerosis (ALS) P10636 (related)
H00077 Progressive supranuclear palsy (PSP) P10636 (related)
H00078 Frontotemporal lobar degeneration (FTLD) P10636 (related)
H01205 Coumarin resistance P11712 (related)
H00457 Primary hypertrophic osteoarthropathy (PHO) P15428 (related)
H01246 Isolated congenital nail clubbing (ICNC) P15428 (related)
H00250 Congenital nongoitrous hypothyroidism (CHNG) P16473 (related)
H01269 Congenital hyperthyroidism P16473 (related)
H01171 Poor drug metabolism (PM) P33261 (related)
H00001 Acute lymphoblastic leukemia (ALL) (precursor B lymphoblastic leukemia) Q01196 (related)
Q01196 (marker)
Q03164 (related)
Q03164 (marker)
H00003 Acute myeloid leukemia (AML) Q01196 (related)
Q01196 (marker)
Q13951 (marker)
H00978 Thrombocytopenia (THC) Q01196 (related)
H00002 Acute lymphoblastic leukemia (ALL) (precursor T lymphoblastic leukemia) Q03164 (related)
H00720 Long QT syndrome Q12809 (related)
H00725 Short QT syndrome Q12809 (related)
H00455 Spinal muscular atrophy (SMA) Q16637 (related)
H00480 Non-syndromic X-linked mental retardation Q99714 (related)
H00658 Syndromic X-linked mental retardation Q99714 (related)
H00925 2-Methyl-3-hydroxybutyryl-CoA dehydrogenase (MHBD) deficiency Q99714 (related)

Diseases related to CTD interactions

20 disease in interactions with metabolites

MESH or OMIM name KNApSAcK
metabolite
D009361 Neoplasm Invasiveness C00024667
D000647 Amnesia C00001819
D001862 Bone Resorption C00001819
D002471 Cell Transformation, Neoplastic C00001819
D003556 Cystitis C00001819
D003920 Diabetes Mellitus C00001819
D003921 Diabetes Mellitus, Experimental C00001819
D003924 Diabetes Mellitus, Type 2 C00001819
D004487 Edema C00001819
D006470 Hemorrhage C00001819
D006937 Hypercholesterolemia C00001819
D006943 Hyperglycemia C00001819
D006949 Hyperlipidemias C00001819
D006973 Hypertension C00001819
D007077 Ileal Diseases C00001819
D007333 Insulin Resistance C00001819
D007410 Intestinal Diseases C00001819
D009369 Neoplasms C00001819
D010190 Pancreatic Neoplasms C00001819
D011471 Prostatic Neoplasms C00001819