PCIDB

KNApSAcK Metabolite C00000992

Metabolite

KNApSAcK Entry

id C00000992
Name Pinocembrin
CAS RN 480-39-7
Standard InChI InChI=1S/C15H12O4/c16-10-6-11(17)15-12(18)8-13(19-14(15)7-10)9-4-2-1-3-5-9/h1-7,13,16-17H,8H2/t13-/m0/s1
Standard InChI (Main Layer) InChI=1S/C15H12O4/c16-10-6-11(17)15-12(18)8-13(19-14(15)7-10)9-4-2-1-3-5-9/h1-7,13,16-17H,8H2

Cluster

Phytochemical cluster No. 14
KCF-S cluster No. 25

Link

ChEMBL

By standard InChI CHEMBL399910
By standard InChI Main Layer CHEMBL70518 CHEMBL399910 CHEMBL399249

KEGG

By LinkDB C09827

CTD

By CAS RN C016063

Species

Summary

Plant class

class name count
rosids 7
asterids 7
Magnoliophyta 4
Spermatophyta 3
eudicotyledons 1
Liliopsida 1

Family (Top 10)

family name count
Asteraceae 6
Pinaceae 3
Piperaceae 2
Annonaceae 2
Viscaceae 1
Rosaceae 1
Lamiaceae 1
Betulaceae 1
Zingiberaceae 1
Combretaceae 1

List (23)

* NCBI
KNApSAcK organism *ID *family *plant class *kingdom
Alnus spp. 3515 Betulaceae rosids Viridiplantae
Anomianthus dulcis 174962 Annonaceae Magnoliophyta Viridiplantae
Boesenbergia rotunda (LINN.) MANSF. 97724 Zingiberaceae Liliopsida Viridiplantae
Citrus spp. 2706 Rutaceae rosids Viridiplantae
Combretum albopunctatum Suesseng 99434 Combretaceae rosids Viridiplantae
Eucalyptus spp. 3932 Myrtaceae rosids Viridiplantae
Flourensia hirsuta 191157 Asteraceae asterids Viridiplantae
Flourensia ilicifolia 191157 Asteraceae asterids Viridiplantae
Flourensia retinophylla 191157 Asteraceae asterids Viridiplantae
Glycyrrhiza glabra 49827 Fabaceae rosids Viridiplantae
Helichrysum forskahlii 630302 Asteraceae asterids Viridiplantae
Helichrysum spp. 59430 Asteraceae asterids Viridiplantae
Phonus arborescens 121177 Asteraceae asterids Viridiplantae
Pinus cembra 58041 Pinaceae Spermatophyta Viridiplantae
Pinus spp. 3318 Pinaceae Spermatophyta Viridiplantae
Piper gaudichaudianum 538273 Piperaceae Magnoliophyta Viridiplantae
Piper hostmannianum 511544 Piperaceae Magnoliophyta Viridiplantae
Populus spp. 3689 Salicaceae rosids Viridiplantae
Prunus spp. 3754 Rosaceae rosids Viridiplantae
Pseudotsuga wilsoniana 71408 Pinaceae Spermatophyta Viridiplantae
Scutellaria spp. 4139 Lamiaceae asterids Viridiplantae
Uvaria chamae 174970 Annonaceae Magnoliophyta Viridiplantae
Viscum coloratum 3971 Viscaceae eudicotyledons Viridiplantae

Human Protein / Gene in interaction

18 ChEMBL Protein in interactions

accession description class description compound assay ID (# of activities) # of diseases
(OMIM / KEGG)
P10635 Cytochrome P450 2D6 Cytochrome P450 2D6 CHEMBL399249 CHEMBL1614110 (1)
1 / 0
Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 Enzyme CHEMBL70518 CHEMBL1794585 (1)
0 / 0
P08047 Transcription factor Sp1 Unclassified protein CHEMBL399910 CHEMBL1058704 (1)
0 / 0
P11309 Serine/threonine-protein kinase pim-1 Pim CHEMBL399910 CHEMBL399249 CHEMBL926333 (3)
0 / 0
P04798 Cytochrome P450 1A1 Cytochrome P450 1A1 CHEMBL399910 CHEMBL1225717 (1)
0 / 0
P11712 Cytochrome P450 2C9 Cytochrome P450 2C9 CHEMBL399249 CHEMBL1614027 (1)
0 / 1
P63092 Guanine nucleotide-binding protein G(s) subunit alpha isoforms short Other membrane protein CHEMBL399910 CHEMBL2114810 (1)
7 / 3
P83916 Chromobox protein homolog 1 Unclassified protein CHEMBL399910 CHEMBL1794401 (1)
0 / 0
Q16678 Cytochrome P450 1B1 Cytochrome P450 1B1 CHEMBL399910 CHEMBL1225718 (1)
4 / 4
P05177 Cytochrome P450 1A2 Cytochrome P450 1A2 CHEMBL399910 CHEMBL1225716 (1)
0 / 0
Q99714 3-hydroxyacyl-CoA dehydrogenase type-2 Enzyme CHEMBL399249 CHEMBL1614227 (1)
3 / 3
Q96QE3 ATPase family AAA domain-containing protein 5 Unclassified protein CHEMBL70518 CHEMBL1738588 (1) CHEMBL1738317 (1)
0 / 0
P33261 Cytochrome P450 2C19 Cytochrome P450 2C19 CHEMBL399249 CHEMBL1613777 (1)
1 / 1
P08684 Cytochrome P450 3A4 Cytochrome P450 3A4 CHEMBL399249 CHEMBL1614108 (1) CHEMBL1613886 (1)
0 / 1
P27695 DNA-(apurinic or apyrimidinic site) lyase Enzyme CHEMBL70518 CHEMBL1614211 (1)
0 / 0
P10636 Microtubule-associated protein tau Unclassified protein CHEMBL399249 CHEMBL1614502 (1)
4 / 3
O00255 Menin Unclassified protein CHEMBL399249 CHEMBL1614531 (1)
2 / 5
Q03164 Histone-lysine N-methyltransferase 2A Enzyme CHEMBL399249 CHEMBL1614531 (1)
1 / 3

CTD interaction (6)

compound gene gene name gene description interaction interaction type form reference
pmid
C016063 5594 MAPK1
ERK
ERK2
ERT1
MAPK2
P42MAPK
PRKM1
PRKM2
p38
p40
p41
p41mapk
mitogen-activated protein kinase 1 (EC:2.7.11.24) pinocembrin inhibits the reaction [Ethanol results in increased phosphorylation of MAPK1 protein] decreases reaction
/ increases phosphorylation
protein 18295389
C016063 5595 MAPK3
ERK-1
ERK1
ERT2
HS44KDAP
HUMKER1A
P44ERK1
P44MAPK
PRKM3
p44-ERK1
p44-MAPK
mitogen-activated protein kinase 3 (EC:2.7.11.24) pinocembrin inhibits the reaction [Ethanol results in increased phosphorylation of MAPK3 protein] decreases reaction
/ increases phosphorylation
protein 18295389
C016063 6817 SULT1A1
HAST1/HAST2
P-PST
PST
ST1A1
ST1A3
STP
STP1
TSPST1
sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 (EC:2.8.2.1) SULT1A1 protein results in increased sulfation of pinocembrin increases sulfation
protein 11181495
C016063 6818 SULT1A3
HAST
HAST3
M-PST
ST1A3/ST1A4
ST1A5
STM
TL-PST
sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 (EC:2.8.2.1) SULT1A3 protein results in increased sulfation of pinocembrin increases sulfation
protein 11181495
C016063 7052 TGM2
G-ALPHA-h
GNAH
TG2
TGC
transglutaminase 2 (EC:2.3.2.13) pinocembrin inhibits the reaction [Ethanol results in increased activity of TGM2 protein] decreases reaction
/ increases activity
protein 18295389
C016063 7052 TGM2
G-ALPHA-h
GNAH
TG2
TGC
transglutaminase 2 (EC:2.3.2.13) pinocembrin inhibits the reaction [Ethanol results in increased expression of TGM2 mRNA] decreases reaction
/ increases expression
mRNA 18295389

Related Disease

Diseases related to proteins in ChEMBL interactions

OMIM (23)

OMIM preferred title UniProt
#300438 17-beta-hydroxysteroid dehydrogenase x deficiency Q99714
#219080 Acth-independent macronodular adrenal hyperplasia; aimah P63092
#609535 Drug metabolism, poor, cyp2c19-related P33261
#608902 Drug metabolism, poor, cyp2d6-related P10635
#600274 Frontotemporal dementia; ftd P10636
#137750 Glaucoma 1, open angle, a; glc1a Q16678
#231300 Glaucoma 3, primary congenital, a; glc3a Q16678
#137760 Glaucoma, primary open angle; poag Q16678
#605130 Hairy elbows, short stature, facial dysmorphism, and developmental delay Q03164
#145000 Hyperparathyroidism 1; hrpt1 O00255
#174800 Mccune-albright syndrome; mas P63092
#300705 Mental retardation, x-linked 17; mrx17 Q99714
#300220 Mental retardation, x-linked, syndromic 10; mrxs10 Q99714
#131100 Multiple endocrine neoplasia, type i; men1 O00255
#166350 Osseous heteroplasia, progressive; poh P63092
#260540 Parkinson-dementia syndrome P10636
#604229 Peters anomaly Q16678
#172700 Pick disease of brain P10636
#102200 Pituitary adenoma, growth hormone-secreting P63092
#103580 Pseudohypoparathyroidism, type ia; php1a P63092
#603233 Pseudohypoparathyroidism, type ib; php1b P63092
#612462 Pseudohypoparathyroidism, type ic; php1c P63092
#601104 Supranuclear palsy, progressive, 1; psnp1 P10636

KEGG DISEASE (23)

KEGG disease name UniProt
H00033 Adrenal carcinoma O00255 (related)
H00034 Carcinoid O00255 (related)
H00045 Malignant islet cell carcinoma O00255 (related)
H00246 Primary hyperparathyroidism O00255 (related)
H01102 Pituitary adenomas O00255 (related)
H00036 Osteosarcoma P08684 (marker)
H00058 Amyotrophic lateral sclerosis (ALS) P10636 (related)
H00077 Progressive supranuclear palsy (PSP) P10636 (related)
H00078 Frontotemporal lobar degeneration (FTLD) P10636 (related)
H01205 Coumarin resistance P11712 (related)
H01171 Poor drug metabolism (PM) P33261 (related)
H00244 Pseudohypoparathyroidism P63092 (related)
H00441 Progressive osseous heteroplasia (POH) P63092 (related)
H00501 Fibrous dysplasia, polyostotic P63092 (related)
H00001 Acute lymphoblastic leukemia (ALL) (precursor B lymphoblastic leukemia) Q03164 (related)
Q03164 (marker)
H00002 Acute lymphoblastic leukemia (ALL) (precursor T lymphoblastic leukemia) Q03164 (related)
H00612 Primary open angle glaucoma Q16678 (related)
H01075 Peters anomaly Q16678 (related)
H01159 Anterior segment dysgenesis (ASD) Q16678 (related)
H01203 Primary congenital glaucoma (PCG) Q16678 (related)
H00480 Non-syndromic X-linked mental retardation Q99714 (related)
H00658 Syndromic X-linked mental retardation Q99714 (related)
H00925 2-Methyl-3-hydroxybutyryl-CoA dehydrogenase (MHBD) deficiency Q99714 (related)