Trifolium pratense

Trifolium pratense

Scientific Name	Trifolium pratense [TAX:57577]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
DBLINKS	KEGG GENOME: T08949

Known viruses (16)

Scientific Name	Clover yellow vein virus [TAX:12198]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus trifolii
RefSeq	NC_003536 Clover yellow vein virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003536 KEGG GENOME: T40163 ICTV: 202304598 ViralZone: genus, family Descriptions of Plant Viruses: 131

Scientific Name	Gloriosa stripe mosaic virus [TAX:12201]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus gloriosae
RefSeq	NC_038562 Gloriosa stripe mosaic virus isolate CB polyprotein gene, complete cds.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_038562 ICTV: 202304615 ViralZone: genus, family Plant Viruses Online: 076

Scientific Name	Pea streak virus [TAX:157777]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus
RefSeq	NC_027527 Pea streak virus isolate VRS-541, complete genome.
Evidence	Literature
Reference	PMID: 26092422
Authors	Su L, Li Z, Bernardy M, Wiersma PA, Cheng Z, Xiang Y
Title	The complete nucleotide sequence and genome organization of pea streak virus (genus Carlavirus).
Journal	Arch Virol. 2015 Oct;160(10):2651-4.
Comment	red clover (Trifolium pratense)
DBLINKS	KEGG BRITE: NC_027527 KEGG GENOME: T40287 Descriptions of Plant Viruses: 112

Scientific Name	Red clover cryptic virus 1 [TAX:1408894]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; unclassified Partitiviridae
RefSeq	NC_022616 Red clover cryptic virus 1 isolate IPP_Nemaro segment 1 RNA-dependent RNA polymerase gene, complete cds. NC_022617 Red clover cryptic virus 1 isolate IPP_Nemaro segment 2 coat protein gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_022616 NC_022617 ViralZone: family Plant Viruses Online: 893

Scientific Name	Red clover cryptic virus 2 [TAX:1323524]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; Betapartitivirus
RefSeq	NC_021096 Red clover cryptic virus 2 isolate IPP_Nemaro segment RNA 1, complete sequence. NC_021097 Red clover cryptic virus 2 isolate IPP_Nemaro segment RNA 2, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_021096 NC_021097 ICTV: 202304169 ViralZone: family, genus

Scientific Name	Red clover mottle virus [TAX:12262]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Comovirus; Comovirus trifolii
RefSeq	NC_003738 Red clover mottle virus RNA 2, complete sequence. NC_003741 Red clover mottle virus RNA 1, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003738 NC_003741 ICTV: 202302085 ViralZone: family, genus Descriptions of Plant Viruses: 74

Scientific Name	Red clover necrotic mosaic virus [TAX:12267]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Dianthovirus; Dianthovirus trifolii
RefSeq	NC_003756 Red clover necrotic mosaic virus RNA-1, complete sequence. NC_003775 Red clover necrotic mosaic virus RNA 2, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003756 NC_003775 ICTV: 202305225 Descriptions of Plant Viruses: 181

Scientific Name	Red clover nepovirus A [TAX:2058094]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Nepovirus pratensis
RefSeq	NC_040399 Red clover nepovirus A isolate B46 segment RNA1, complete sequence. NC_040400 Red clover nepovirus A isolate B46 segment RNA2, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 29397455
Authors	Koloniuk I, Přibylová J, Fránová J
Title	Molecular characterization and complete genome of a novel nepovirus from red clover.
Journal	Arch Virol. 2018 May;163(5):1387-1389.
Comment	B46
DBLINKS	KEGG BRITE: NC_040399 NC_040400 ICTV: 202312971 ViralZone: family, genus

Scientific Name	Red clover varicosavirus [TAX:2058093]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; unclassified Rhabdoviridae
RefSeq	NC_078466 Red clover varicosavirus isolate HZ2 segment RNA2, complete sequence. NC_078467 Red clover varicosavirus isolate HZ2 segment RNA1, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_078466 NC_078467 ICTV: 202309369 ViralZone: family

Scientific Name	red clover-associated luteovirus [TAX:2734354]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Luteovirus; Luteovirus trifolii
RefSeq	NC_076018 Red clover associated virus isolate HZ8, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076018 ICTV: 202307552

Scientific Name	Red clover-associated virus 1 [TAX:2315578]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Waikavirus; Waikavirus trifolii
RefSeq	NC_076635 Red clover associated virus 1 isolate NURH6-2017, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076635 ICTV: 202313826 ViralZone: family, genus

Scientific Name	Subterranean clover stunt virus [TAX:36772]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus
RefSeq	NC_003812 Subterranean clover stunt virus m-rep gene for 33.24 kDa master Rep protein (SCSV8). NC_003813 Subterranean clover stunt virus (SCSV1) gene, complete cds. NC_003815 Subterranean clover stunt virus (SCSV3) gene, complete cds. NC_003816 Subterranean clover stunt virus (SCSV4) gene, complete cds. NC_003817 Subterranean clover stunt virus coat protein (SCSV5) gene, complete cds. NC_003819 Subterranean clover stunt virus (SCSV7) gene, complete cds. NC_078215 Subterranean clover stunt virus isolate Myall Vale 2534B segment DNA-U2, complete sequence. NC_078216 Subterranean clover stunt virus isolate Myall Vale 2534B segment DNA-N, complete sequence. NC_078217 Subterranean clover stunt virus isolate Myall Vale 2534B segment DNA-U1, complete sequence. NC_078218 Subterranean clover stunt virus isolate Myall Vale 2534B segment DNA-U4.1, complete sequence. NC_078219 Subterranean clover stunt virus isolate Myall Vale 2534B segment DNA-S, complete sequence. NC_078220 Subterranean clover stunt virus isolate Myall Vale 2534B segment DNA-M, complete sequence. NC_078221 Subterranean clover stunt virus isolate Myall Vale 2534B segment DNA-C, complete sequence. NC_078222 Subterranean clover stunt virus isolate Myall Vale 2534B segment DNA-R, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003812 NC_003813 NC_003815 NC_003816 NC_003817 NC_003819 NC_078215 NC_078216 NC_078217 NC_078218 NC_078219 NC_078220 NC_078221 NC_078222 ICTV: 202303905 ViralZone: family, genus Descriptions of Plant Viruses: 396

Scientific Name	Sweet clover necrotic mosaic virus [TAX:28348]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Dianthovirus; Dianthovirus meliloti
RefSeq	NC_003806 Sweet clover necrotic mosaic virus RNA 1, complete sequence. NC_003807 Sweet clover necrotic mosaic virus RNA 2, complete sequence.
Evidence	Literature
Reference	Genetic Determinants Distributed in Two Genomic RNAs of Sweet Clover Necrotic Mosaic, Red Clover Necrotic Mosaic and Clover Primary Leaf Necrosis Viruses
DBLINKS	KEGG BRITE: NC_003806 NC_003807 ICTV: 202305226 Descriptions of Plant Viruses: 321

Scientific Name	Tobacco streak virus [TAX:12317]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Ilarvirus
RefSeq	NC_003842 Tobacco streak virus putative viral polymerase and putative 2b protein genes, complete cds. NC_003844 Tobacco streak virus RNA 1, complete sequence. NC_003845 Tobacco streak virus RNA 3, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003842 NC_003844 NC_003845 KEGG GENOME: T40149 ICTV: 202302794 Descriptions of Plant Viruses: 307, 381, 44

Scientific Name	Trifolium pratense virus A [TAX:2448906]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus; Cytorhabdovirus alphatrifolii
RefSeq	NC_076290 Trifolium pratense virus A isolate 29/15/1 putative N protein (QKM63_gp1), putative P protein (QKM63_gp2), putative P3 protein (QKM63_gp3), putative M protein (QKM63_gp4), putative G protein (QKM63_gp5), and putative L protein (QKM63_gp6) genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076290 ICTV: 202308908 ViralZone: genus, family

Scientific Name	Trifolium pratense virus B [TAX:2448907]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus; Cytorhabdovirus betatrifolii
RefSeq	NC_076289 Trifolium pratense virus B isolate 1/2014 putative N protein (QKM62_gp1), putative P protein (QKM62_gp2), putative P3 protein (QKM62_gp3), putative M protein (QKM62_gp4), putative G protein (QKM62_gp5), and putative L protein (QKM62_gp6) genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076289 ICTV: 202308909 ViralZone: genus, family