Species

KNApSAcK Entry

Organism name Cryptomeria japonica
Genus Cryptomeria
Family Taxodiaceae
Kingdom Plantae

NCBI taxonomy

Entry

Linked NCBI taxonomy name Cryptomeria japonica
Linked NCBI taxonomy ID 3369
Linked level species

Family

Family in NCBI taxonomy Cupressaceae
ID 3367

Kingdom (Superkingdom)

Kingdom (Superkingdom) in NCBI taxonomy Viridiplantae
ID 33090

Plant class

Plant class Spermatophyta
ID 58024

Metabolite list (45)

KNApSAcK ID name ChEMBL link CTD link # of proteins in
ChEMBL interaction
/ related OMIM
/ related KEGG DISEASE
# of genes in
CTD interaction
/ related diseases
KCF-S
cluster
phytochemical
cluster
figure
C00004653 External link 512 Retusine
/ Retusin(Ariocarpus)
/ Quercetin 3,7,3',4'-tetramethyl ether
/ 5-Hydroxy-3,7,3',4'-tetramethoxyflavone
/ 2-(3,4-Dimethoxyphenyl)-5-hydroxy-3,7-dimethoxy-4H-1-benzopyran-4-one
CHEMBL77966
3 / 3 / 0 No. 8 No. 15
C00009092 External link 512 [Catechin-(4alpha->8)]2-epicatechin
CHEMBL290632
13 / 5 / 6 No. 29 No. 19
C00009091 External link 512 Procyanidin C2
CHEMBL290632
13 / 5 / 6 No. 29 No. 19
C00006501 External link 512 Amentoflavone 7,4',7'',4'''-tetramethyl ether
CHEMBL378516
1 / 0 / 0 No. 34 No. 18
C00006536 External link 512 Cryptomerin A
No. 34 No. 18
C00006485 External link 512 3'''-Hydroxyamentoflavone
No. 34 No. 18
C00006538 External link 512 Cryptomerin B
No. 34 No. 18
C00004573 External link 512 3,7,4'-Tri-O-methylkaempferol
/ Kaempferol 3,7,4'-trimethyl ether
/ 5-Hydroxy-3,7,4'-trimethoxyflavone
/ 5-Hydroxy-3,7-dimethoxy-2-(4-methoxyphenyl)-4H-1-benzopyran-4-one
CHEMBL77686
No. 35 No. 15
C00021272 External link 512 Cubebol
/ (-)-Cubebol
/ Cubeb camphor
No. 197 No. 38
C00031766 External link 512 Epicubebol
/ epi-Cubebol
/ 4-epi-Cubebol
No. 197 No. 38
C00020066 External link 512 T-Cadinol
/ epi-alpha-Cadinol
CHEMBL486795
C072576
No. 205 No. 38
C00031284 External link 512 Sandaracopimarinal
No. 208 No. 48
C00031283 External link 512 Sandaracopimaric acid
/ (-)-Sandaracopimaric acid
CHEMBL513197
CHEMBL1397211
CHEMBL1410398
CHEMBL1735595
C082072
14 / 13 / 7 No. 208 No. 48
C00031286 External link 512 Sandaracopimarinol acetate
No. 208 No. 48
C00031285 External link 512 Sandaracopimarinol
No. 208 No. 48
C00000606 External link 512 (-)-Matairesinol
CHEMBL425148
C068935
1 / 0 / 0 No. 223 No. 21
C00007203 External link 512 (+)-Wikstromol
/ (+)-Nortrachelogenin
CHEMBL453799
CHEMBL1483370
3 / 2 / 2 No. 223 No. 21
C00000604 External link 512 (-)-Secoisolariciresinol
CHEMBL368347
C060283
2 / 1 / 1 1 / 0 No. 282 No. 21
C00012765 External link 512 Proximadiol
/ Cryptomeridiol
/ Selina-4,7-diol
/ Selinane-4alpha,11-diol
CHEMBL465860
CHEMBL1288770
No. 351
C00031398 External link 512 Sugiol
/ (+)-Sugiol
CHEMBL195296
No. 355
C00029572 External link 512 6alpha-Hydroxysuginyl methyl ether
No. 355
C00031522 External link 512 19-Hydroxyferruginol
CHEMBL197310
No. 359 No. 40
C00035987 External link 512 bietatriene
/ Dehydroabietane
/ Abieta-8,11,13-triene
No. 359 No. 40
C00007204 External link 512 Isolariciresinol
/ (+)-Isolariciresinol
CHEMBL399512
CHEMBL1760593
C060284
2 / 1 / 1 No. 406
C00002591 External link 512 (-)-Cubebin
/ beta-Cubebin
/ (-)-beta-Cubebin
/ (8R,8'R,9S)-Cubebin
CHEMBL182001
CHEMBL399831
C433065
2 / 1 / 1 0 / 2 No. 629 No. 21
C00002609 External link 512 Hinokiol
/ (+)-Hinokiol
CHEMBL16901
26 / 24 / 20 No. 761 No. 23
C00020074 External link 512 Calamenene
/ (-)-cis-Calamenene
No. 824
C00031571 External link 512 Agatharesinol
No. 922 No. 24
C00031369 External link 512 Sequirin C
CHEMBL1689216
No. 922 No. 24
C00031792 External link 512 Formosaninol
/ (+)-Formosaninol
No. 1508
C00032254 External link 512 Sugikurojin C
/ (-)-Sugikurojin C
No. 1508
C00007636 External link 512 delta-Cadinene
CHEMBL445759
No. 1524 No. 39
C00002657 External link 512 p-Formylphenol
/ 4-Hydroxybenzaldehyde
/ p-Hydroxybenzaldehyde
CHEMBL14193
C011483
3 / 2 / 2 No. 2076
C00031626 External link 512 beta-Elemol
No. 2406
C00032262 External link 512 Sequirin A
/ Sugiresinol
No. 2651 No. 24
C00023987 External link 512 LL-P880alpha
/ (-)-Pestalotin
No. 3287
C00011647 External link 512 (-)-Cryptomerione
/ (R)-Cryptomerione
No. 4035
C00032253 External link 512 Sugikurojin A
/ (+)-Sugikurojin A
No. 4912
C00032261 External link 512 Sugikurojinol B
/ 1,8-Epoxy-1(6),2,4,7,10-bisaborapentaen-4-ol
No. 5168
C00000596 External link 512 (-)-Cryptoresinol
No. 6525
C00032259 External link 512 Sugikurojin J
/ (-)-Sugikurojin J
No. 6625
C00032260 External link 512 Sugikurojinol A
/ (4S)-2,6,10-Bisaboratrien-4-ol-1-one
No. 6634
C00035967 External link 512 7(14),10-bisaboladien-1-ol-4-one
No. 7744
C00011660 External link 512 Cryptomerone
No. 7898
C00032258 External link 512 Sugikurojin I
/ (+)-Sugikurojin I
No. 8381

Human Protein / Gene in interactions

57 ChEMBL Protein in interactions

accession description class description KNApSAcK metabolite in interactions # of diseases
(OMIM / KEGG)
P10635 Cytochrome P450 2D6 Cytochrome P450 2D6 C00000604 C00002591 C00007204 1 / 0
P08684 Cytochrome P450 3A4 Cytochrome P450 3A4 C00000604 C00002591 C00007204 0 / 1
Q02156 Protein kinase C epsilon type Eta C00009091 C00009092 0 / 0
P24723 Protein kinase C eta type Eta C00009091 C00009092 1 / 0
P05771 Protein kinase C beta type Alpha C00009091 C00009092 0 / 0
P10253 Lysosomal alpha-glucosidase Hydrolase C00002609 C00007203 1 / 1
P05129 Protein kinase C gamma type Alpha C00009091 C00009092 1 / 1
P14780 Matrix metalloproteinase-9 M10A C00009091 C00009092 2 / 2
Q05655 Protein kinase C delta type Delta C00009091 C00009092 0 / 0
P17252 Protein kinase C alpha type Alpha C00009091 C00009092 0 / 0
O94806 Serine/threonine-protein kinase D3 Pkd C00009091 C00009092 0 / 0
Q99700 Ataxin-2 Unclassified protein C00002609 C00007203 1 / 1
Q04759 Protein kinase C theta type Delta C00009091 C00009092 0 / 1
Q05513 Protein kinase C zeta type Iota C00009091 C00009092 0 / 0
P47870 Gamma-aminobutyric acid receptor subunit beta-2 GABA-A beta C00002609 C00031283 0 / 0
P14867 Gamma-aminobutyric acid receptor subunit alpha-1 GABA-A alpha C00002609 C00031283 1 / 1
O75164 Lysine-specific demethylase 4A Enzyme C00002609 C00031283 0 / 0
P41743 Protein kinase C iota type Iota C00009091 C00009092 0 / 0
Q96QE3 ATPase family AAA domain-containing protein 5 Unclassified protein C00007203 C00031283 0 / 0
P08253 72 kDa type IV collagenase M10A C00009091 C00009092 1 / 3
P43220 Glucagon-like peptide 1 receptor Glucagon-like peptide receptor C00002609 C00031283 0 / 0
P84022 Mothers against decapentaplegic homolog 3 Unclassified protein C00002609 C00031283 2 / 0
O75496 Geminin Unclassified protein C00002609 C00031283 0 / 0
Q15139 Serine/threonine-protein kinase D1 Pkd C00009091 C00009092 0 / 0
Q9Y2T6 G-protein coupled receptor 55 Lysophosphatidylinositol receptor C00002609 0 / 0
P63092 Guanine nucleotide-binding protein G(s) subunit alpha isoforms short Other membrane protein C00031283 7 / 3
Q9Y253 DNA polymerase eta Enzyme C00031283 1 / 1
P11021 78 kDa glucose-regulated protein Unclassified protein C00002609 0 / 0
P39748 Flap endonuclease 1 Enzyme C00002609 0 / 0
P37231 Peroxisome proliferator-activated receptor gamma NR1C3 C00002609 5 / 3
P80404 4-aminobutyrate aminotransferase, mitochondrial Transferase C00002657 1 / 1
Q13133 Oxysterols receptor LXR-alpha NR1H3 C00002609 0 / 0
P56817 Beta-secretase 1 A1A C00006501 0 / 0
P14902 Indoleamine 2,3-dioxygenase 1 Enzyme C00002657 0 / 0
Q9UNQ0 ATP-binding cassette sub-family G member 2 ATP binding cassette C00004653 2 / 0
P04278 Sex hormone-binding globulin Secreted protein C00000606 0 / 0
P33261 Cytochrome P450 2C19 Cytochrome P450 2C19 C00031283 1 / 1
P17405 Sphingomyelin phosphodiesterase Enzyme C00002609 2 / 2
P34972 Cannabinoid receptor 2 Cannabinoid receptor C00002609 0 / 0
P27695 DNA-(apurinic or apyrimidinic site) lyase Enzyme C00002609 0 / 0
P10636 Microtubule-associated protein tau Unclassified protein C00002609 4 / 3
Q16236 Nuclear factor erythroid 2-related factor 2 Unclassified protein C00031283 0 / 0
Q9GZV3 High affinity choline transporter 1 Choline Na-symporter C00002609 1 / 0
O75874 Isocitrate dehydrogenase [NADP] cytoplasmic Enzyme C00031283 1 / 0
O00255 Menin Unclassified protein C00002609 2 / 5
Q03164 Histone-lysine N-methyltransferase 2A Enzyme C00002609 1 / 2
P11712 Cytochrome P450 2C9 Cytochrome P450 2C9 C00031283 0 / 1
P08183 Multidrug resistance protein 1 drug C00004653 1 / 0
P51649 Succinate-semialdehyde dehydrogenase, mitochondrial Oxidoreductase C00002657 1 / 1
P19793 Retinoic acid receptor RXR-alpha NR2B1 C00002609 0 / 0
P37840 Alpha-synuclein Unclassified protein C00002609 4 / 2
Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 Enzyme C00031283 0 / 0
Q03181 Peroxisome proliferator-activated receptor delta NR1C2 C00002609 0 / 0
P06746 DNA polymerase beta Enzyme C00002609 0 / 0
P09917 Arachidonate 5-lipoxygenase Oxidoreductase C00002609 0 / 0
P33527 Multidrug resistance-associated protein 1 drugs C00004653 0 / 0
P21554 Cannabinoid receptor 1 Cannabinoid receptor C00002609 0 / 0

1 Gene in CTD interactions

gene gene name gene description KNApSAcK metabolite in interactions
8856 NR1I2, BXR, ONR1, PAR, PAR1, PAR2, PARq, PRR, PXR, SAR, SXR nuclear receptor subfamily 1, group I, member 2 C00000604

Related Diseases

Diseases related to proteins in ChEMBL interactions

OMIM (44)

OMIM preferred title UniProt
#219080 Acth-independent macronodular adrenal hyperplasia; aimah P63092
#614490 Blood group, junior system; jr Q9UNQ0
%606641 Body mass index; bmi P37231
#609338 Carotid intimal medial thickness 1 P37231
#114500 Colorectal cancer; crc P84022
#127750 Dementia, lewy body; dlb P37840
#609535 Drug metabolism, poor, cyp2c19-related P33261
#608902 Drug metabolism, poor, cyp2d6-related P10635
#611136 Epilepsy, juvenile myoclonic, susceptibility to, 5; ejm5 P14867
#600274 Frontotemporal dementia; ftd P10636
#613163 Gaba-transaminase deficiency P80404
#137800 Glioma susceptibility 1; glm1 O75874
P37231
#232300 Glycogen storage disease ii P10253
#605130 Hairy elbows, short stature, facial dysmorphism, and developmental delay Q03164
#145000 Hyperparathyroidism 1; hrpt1 O00255
#612244 Inflammatory bowel disease 13; ibd13 P08183
#603932 Intervertebral disc disease; idd P14780
#604367 Lipodystrophy, familial partial, type 3; fpld3 P37231
#613795 Loeys-dietz syndrome, type 3; lds3 P84022
#174800 Mccune-albright syndrome; mas P63092
#613073 Metaphyseal anadysplasia 2; mandp2 P14780
#259600 Multicentric osteolysis, nodulosis, and arthropathy; mona P08253
#131100 Multiple endocrine neoplasia, type i; men1 O00255
#158580 Neuronopathy, distal hereditary motor, type viia; hmn7a Q9GZV3
#257200 Niemann-pick disease, type a P17405
#607616 Niemann-pick disease, type b P17405
#601665 Obesity P37231
#166350 Osseous heteroplasia, progressive; poh P63092
#168601 Parkinson disease 1, autosomal dominant; park1 P37840
#605543 Parkinson disease 4, autosomal dominant; park4 P37840
#168600 Parkinson disease, late-onset; pd P37840
#260540 Parkinson-dementia syndrome P10636
#172700 Pick disease of brain P10636
#102200 Pituitary adenoma, growth hormone-secreting P63092
#103580 Pseudohypoparathyroidism, type ia; php1a P63092
#603233 Pseudohypoparathyroidism, type ib; php1b P63092
#612462 Pseudohypoparathyroidism, type ic; php1c P63092
#605361 Spinocerebellar ataxia 14; sca14 P05129
#183090 Spinocerebellar ataxia 2; sca2 Q99700
#601367 Stroke, ischemic P24723
#271980 Succinic semialdehyde dehydrogenase deficiency; ssadhd P51649
#601104 Supranuclear palsy, progressive, 1; psnp1 P10636
#138900 Uric acid concentration, serum, quantitative trait locus 1; uaqtl1 Q9UNQ0
#278750 Xeroderma pigmentosum, variant type; xpv Q9Y253

KEGG DISEASE (34)

KEGG name UniProt
H00033 Adrenal carcinoma O00255 (related)
H00034 Carcinoid O00255 (related)
H00045 Malignant islet cell carcinoma O00255 (related)
H00246 Primary hyperparathyroidism O00255 (related)
H01102 Pituitary adenomas O00255 (related)
H00063 Spinocerebellar ataxia (SCA) P05129 (related)
Q99700 (related)
H00025 Penile cancer P08253 (related)
P14780 (related)
H00028 Choriocarcinoma P08253 (related)
H00472 Torg-Winchester syndrome P08253 (related)
H00036 Osteosarcoma P08684 (marker)
H00069 Glycogen storage diseases (GSD) P10253 (related)
H00058 Amyotrophic lateral sclerosis (ALS) P10636 (related)
H00077 Progressive supranuclear palsy (PSP) P10636 (related)
H00078 Frontotemporal lobar degeneration (FTLD) P10636 (related)
H01205 Coumarin resistance P11712 (related)
H00479 Metaphyseal dysplasias P14780 (related)
H00808 Idiopathic generalized epilepsies (IGEs) P14867 (related)
H00137 Niemann-Pick disease (NPD) typeA and B P17405 (related)
H00424 Defects in the degradation of sphingomyelin P17405 (related)
H01171 Poor drug metabolism (PM) P33261 (related)
H00032 Thyroid cancer P37231 (related)
H00409 Type II diabetes mellitus P37231 (related)
H00420 Familial partial lipodystrophy (FPL) P37231 (related)
H00057 Parkinson's disease (PD) P37840 (related)
H00066 Lewy body dementia (LBD) P37840 (related)
H00835 Succinic semialdehyde dehydrogenase (SSADH) deficiency P51649 (related)
H00244 Pseudohypoparathyroidism P63092 (related)
H00441 Progressive osseous heteroplasia (POH) P63092 (related)
H00501 Fibrous dysplasia, polyostotic P63092 (related)
H01257 GABA-transaminase deficiency P80404 (related)
H00001 Acute lymphoblastic leukemia (ALL) (precursor B lymphoblastic leukemia) Q03164 (related)
Q03164 (marker)
H00002 Acute lymphoblastic leukemia (ALL) (precursor T lymphoblastic leukemia) Q03164 (related)
H00408 Type I diabetes mellitus Q04759 (related)
H00403 Disorders of nucleotide excision repair Q9Y253 (related)

Diseases related to CTD interactions

2 disease in interactions with metabolites

MESH or OMIM name KNApSAcK
metabolite
D004487 Edema C00002591
D010146 Pain C00002591