| 
| Scientific Name | Gallus gallus [TAX:9031] | 
|---|
 | Lineage | cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus | 
|---|
 | DBLINKS |  | 
|---|
 Known viruses (126)
 
 
| Scientific Name | Amphotropic murine leukemia virus [TAX:188539] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Gammaretrovirus murleu; Murine leukemia virus; unclassified Murine leukemia virus | 
|---|
 | GenBank | 
Amphotropic murine leukemia virus strain 1313, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 17147829 |  
      | Authors | Howard TM, Sheng Z, Wang M, Wu Y, Rasheed S |  
      | Title | Molecular and phylogenetic analyses of a new amphotropic murine leukemia virus (MuLV-1313). |  
      
      | Journal | Virol J. 2006 Dec 5;3:101. |  
      
    
    
       
      | Comment | Culture cell line: RD cells, chicken embryo cells, rat embryo cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Anaconda paramyxovirus [TAX:1529450] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Feraresvirinae; Ferlavirus; Ferlavirus reptilis | 
|---|
 | GenBank | 
Anaconda paramyxovirus isolate RF111111, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 25078906 |  
      | Authors | Woo PC, Lau SK, Martelli P, Hui SW, Lau CC, Fan RY, Groff JM, Tam EW, Chan KH, Yuen KY |  
      | Title | Fatal systemic necrotizing infections associated with a novel paramyxovirus, anaconda paramyxovirus, in green anaconda juveniles. |  
      
      | Journal | J Clin Microbiol. 2014 Oct;52(10):3614-23. |  
      
    
    
       
      | Comment | Culture cell line: BHK21, HF, Calu-3, A549, Hep-2, Caco-2, HRT-18G, Huh-7, Hela, HEK, NT2, RD, SF268, His-1, MDCK, MDBK, RK13, 3T3, Dubca, LLC-MK2, Vero, VeroE6, CRFK, PK-15, RK3E, RMC,DF-1, C6/36 cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | anativirus B1 [TAX:2870379] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Anativirus; Anativirus biphaco | 
|---|
 | RefSeq | 
Anativirus B1, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian adeno-associated virus ATCC VR-865 [TAX:219704] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Dependoparvovirus; Dependoparvovirus avian1 | 
|---|
 | RefSeq | 
Avian adeno-associated virus ATCC VR-865, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 12768000 |  
      | Authors | Bossis I, Chiorini JA |  
      | Title | Cloning of an avian adeno-associated virus (AAAV) and generation of recombinant AAAV particles. |  
      
      | Journal | J Virol. 2003 Jun;77(12):6799-810. |  
      
    
    
       
      | Comment | Culture cell line: CEF, DF-1, LMH, QNR, QT6, Chicken primary embryonic kidney cells, Chicken primary pituitary cells, COS cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian adeno-associated virus strain DA-1 [TAX:281492] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Dependoparvovirus; Dependoparvovirus avian1 | 
|---|
 | RefSeq | 
Avian adeno-associated virus strain DA-1, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 15351493 |  
      | Authors | Estevez C, Villegas P |  
      | Title | Sequence analysis, viral rescue from infectious clones and generation of recombinant virions of the avian adeno-associated virus. |  
      
      | Journal | Virus Res. 2004 Oct;105(2):195-208. |  
      
    
    
       
      | Comment | Culture cell line: chicken eggs |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian carcinoma virus [TAX:11958] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; unclassified Alpharetrovirus | 
|---|
 | RefSeq | 
Avian carcinoma virus, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 2986131 |  
      | Authors | Hayflick J, Seeburg PH, Ohlsson R, Pfeifer-Ohlsson S, Watson D, Papas T, Duesberg PH |  
      | Title | Nucleotide sequence of two overlapping myc-related genes in avian carcinoma virus OK10 and their relation to the myc genes of other viruses and the cell. |  
      
      | Journal | Proc Natl Acad Sci U S A. 1985 May;82(9):2718-22. |  
      
    
    
  
  
     
    | Evidence | Literature |  
    
      | Reference | PMID: 3016301 |  
      | Authors | Patschinsky T, Jansen HW, Blöcker H, Frank R, Bister K |  
      | Title | Structure and transforming function of transduced mutant alleles of the chicken c-myc gene. |  
      
      | Journal | J Virol. 1986 Aug;59(2):341-53. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian endogenous retrovirus EAV-HP [TAX:93465] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; unclassified Retroviridae; Avian retroviruses | 
|---|
 | RefSeq | 
Avian endogenous retrovirus EAV-HP, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 10627540 |  
      | Authors | Sacco MA, Flannery DM, Howes K, Venugopal K |  
      | Title | Avian endogenous retrovirus EAV-HP shares regions of identity with avian leukosis virus subgroup J and the avian retrotransposon ART-CH. |  
      
      | Journal | J Virol. 2000 Feb;74(3):1296-306. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian gyrovirus 2 [TAX:1002273] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Commensaviricota; Cardeaviricetes; Sanitavirales; Anelloviridae; Gyrovirus; Gyrovirus galga1 | 
|---|
 | RefSeq | 
Avian gyrovirus 2, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian hepatitis E virus [TAX:2907992] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Hepelivirales; Hepeviridae; Orthohepevirinae; Avihepevirus; Avihepevirus magniiecur | 
|---|
 | RefSeq | 
Avian hepatitis E virus, complete genome. | 
|---|
 
  | Evidence | UniProt |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian infectious bronchitis virus partridge/GD/S14/2003 [TAX:284515] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Gammacoronavirus galli; Avian coronavirus; Infectious bronchitis virus | 
|---|
 | GenBank | 
Avian infectious bronchitis virus partridge/GD/S14/2003, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 17037560 |  
      | Authors | Britton P, Casais R, Hodgson T, Davis M, Cavanagh D |  
      | Title | Genes 3 and 5 of infectious bronchitis virus are accessory protein genes. |  
      
      | Journal | Adv Exp Med Biol. 2006;581:363-8. |  
      
    
    
       
      | Comment | Culture cell line: CK cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian leukemia virus [TAX:11946] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avileu; Avian leukosis virus | 
|---|
 | RefSeq | 
Avian leukemia virus isolate SCDY1, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian leukosis virus [TAX:11864] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avileu | 
|---|
 | GenBank | 
Avian leukosis virus strain MQNCSU, complete genome. 
Avian leukosis virus, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
       
      | Reference | Chesters,P.M., Howes,K. and Nair,V. , Isolation and Characterization of an Avian Leukosis Virus from Chicken Macropohage Cell Line MQ-NCSU, Unpublished 
 |  
      | Comment | Culture cell line: Chicken Macropohage cells |  
    | Evidence | Literature |  
    
      | Reference | PMID: 1311072 |  
      | Authors | Bieth E, Darlix JL |  
      | Title | Complete nucleotide sequence of a highly infectious avian leukosis virus. |  
      
      | Journal | Nucleic Acids Res. 1992 Jan 25;20(2):367. |  
      
      |  | 動物由来レトロウイルスの受容体〔ウイルス 第 59 巻 第 2 号,pp.223-242,2009〕 
 |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian leukosis virus - RSA [TAX:363745] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avileu; Avian leukosis virus | 
|---|
 | RefSeq | 
Avian leukosis virus - RSA, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 1311072 |  
      | Authors | Bieth E, Darlix JL |  
      | Title | Complete nucleotide sequence of a highly infectious avian leukosis virus. |  
      
      | Journal | Nucleic Acids Res. 1992 Jan 25;20(2):367. |  
      
    
    
       
      | Comment | Culture cell line: chick embryo fibroblasts |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian leukosis virus ev/J [TAX:1401444] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avileu; Avian leukosis virus | 
|---|
 | GenBank | 
Avian leukosis virus subgroup J isolate PDRC-59831, complete genome. | 
|---|
 
  | Evidence | GenBank |  
    | Evidence | Literature |  
    
      | Reference | PMID: 25858851 |  
      | Authors | Malhotra S, Justice J 4th, Lee N, Li Y, Zavala G, Ruano M, Morgan R, Beemon K |  
      | Title | Complete genome sequence of an american avian leukosis virus subgroup j isolate that causes hemangiomas and myeloid leukosis. |  
      
      | Journal | Genome Announc. 2015 Apr 9;3(2). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian myeloblastosis virus [TAX:11866] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avimyebla | 
|---|
 | GenBank | 
Avian myeloblastosis virus p27/CA gene, complete cds; and polyprotein II and v-myb product genes, partial cds. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 6283631 |  
      | Authors | Rushlow KE, Lautenberger JA, Papas TS, Baluda MA, Perbal B, Chirikjian JG, Reddy EP |  
      | Title | Nucleotide sequence of the transforming gene of avian myeloblastosis virus. |  
      
      | Journal | Science. 1982 Jun 25;216(4553):1421-3. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian myelocytomatosis virus [TAX:11867] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; unclassified Alpharetrovirus | 
|---|
 | RefSeq | 
Avian myelocytomatosis virus, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 228482 |  
      | Authors | Quade K |  
      | Title | Transformation of mammalian cells by avian myelocytomatosis virus and avian erythroblastosis virus. |  
      
      | Journal | Virology. 1979 Oct 30;98(2):461-5. |  
      
    
    
       
      | Comment | Culture cell line: chick embryo fibroblasts |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian myelocytomatosis virus 29 [TAX:11868] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avimyecyt29 | 
|---|
 | GenBank | 
Avian myelocytomatosis virus 29, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 6284994 |  
      | Authors | Vennstrom B, Sheiness D, Zabielski J, Bishop JM |  
      | Title | Isolation and characterization of c-myc, a cellular homolog of the oncogene (v-myc) of avian myelocytomatosis virus strain 29. |  
      
      | Journal | J Virol. 1982 Jun;42(3):773-9. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian nephritis virus 1 [TAX:336960] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Stellavirales; Astroviridae; Avastrovirus; Avastrovirus galli; Avastrovirus 2 | 
|---|
 | GenBank | 
Avian nephritis virus 1 from China, complete genome. | 
|---|
 
  | Evidence | GenBank |  
  | Evidence | UniProt |  
    | Evidence | Literature |  
    
      | Reference | PMID: 21500638 |  
      | Authors | Zhao W, Hua XG, Yuan L, Cui L, Shan TL, Dai XQ, Zhu AL, Yu Y, Zhu CX, Yang ZB |  
      | Title | Sequence analyses of the representative Chinese-prevalent strain of avian nephritis virus in healthy chicken flocks. |  
      
      | Journal | Avian Dis. 2011 Mar;55(1):65-9. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | avian paramyxovirus 1 [TAX:2560319] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus javaense | 
|---|
 | RefSeq | 
Newcastle disease virus isolate JSD0812, complete genome. 
Newcastle disease virus isolate chicken/N. Ireland/Ulster/67, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 23178584 |  
      | Authors | De Battisti C, Salomoni A, Ormelli S, Monne I, Capua I, Cattoli G |  
      | Title | Rapid pathotyping of Newcastle Disease Virus by pyrosequencing. |  
      
      | Journal | J Virol Methods. 2013 Mar;188(1-2):13-20. |  
      
    
    
  
  
     
    | Evidence | Literature |  
    
      | Reference | PMID: 26634760 |  
      | Authors | Liu M, Shen X, Cheng X, Li J, Dai Y |  
      | Title | Characterization and Sequencing of a Genotype VIId Newcastle Disease Virus Isolated from Laying Ducks in Jiangsu, China. |  
      
      | Journal | Genome Announc. 2015 Dec 3;3(6). |  
      
      |  | Isolation and preliminary identification of a virulent Newcastle disease virus isolate of duck origin
M Liu, YY Wei, YB Dai, X Cheng, S Zhou… - Chin J Anim Infect …, 2010 - en.cnki.com.cn 
 |  
      | Comment | Laboratory host: Gallus gallus |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avian paramyxovirus 10 [TAX:862945] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus falklandense | 
|---|
 | RefSeq | 
Avian paramyxovirus penguin/Falkland Islands/324/2007, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 20702635 |  
      | Authors | Miller PJ, Afonso CL, Spackman E, Scott MA, Pedersen JC, Senne DA, Brown JD, Fuller CM, Uhart MM, Karesh WB, Brown IH, Alexander DJ, Swayne DE |  
      | Title | Evidence for a new avian paramyxovirus serotype 10 detected in rockhopper penguins from the Falkland Islands. |  
      
      | Journal | J Virol. 2010 Nov;84(21):11496-504. |  
      
    
    
       
      | Comment | Culture cell line: SPF ECE,vero cells, DF1 cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avian paramyxovirus 11 [TAX:2560310] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus galliense | 
|---|
 | RefSeq | 
Avian paramyxovirus 11 isolate common_snipe/France/100212/2010, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 22733876 |  
      | Authors | Briand FX, Henry A, Massin P, Jestin V |  
      | Title | Complete genome sequence of a novel avian paramyxovirus. |  
      
      | Journal | J Virol. 2012 Jul;86(14):7710. |  
      
    
    
       
      | Comment | Culture cell line: embryonated specific-pathogen-free chicken eggs |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avian paramyxovirus 12 [TAX:2560320] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus italiense | 
|---|
 | RefSeq | 
Avian paramyxovirus 12 isolate Wigeon/Italy/3920_1/2005, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 23708253 |  
      | Authors | Terregino C, Aldous EW, Heidari A, Fuller CM, De Nardi R, Manvell RJ, Beato MS, Shell WM, Monne I, Brown IH, Alexander DJ, Capua I |  
      | Title | Antigenic and genetic analyses of isolate APMV/wigeon/Italy/3920-1/2005 indicate that it represents a new avian paramyxovirus (APMV-12). |  
      
      | Journal | Arch Virol. 2013 Nov;158(11):2233-43. |  
      
    
    
       
      | Comment | Laboratory host: chicken |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avian paramyxovirus 13 [TAX:2560321] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus japanense | 
|---|
 | RefSeq | 
Avian paramyxovirus goose/Shimane/67/2000 viral cRNA, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 25866408 |  
      | Authors | Yamamoto E, Ito H, Tomioka Y, Ito T |  
      | Title | Characterization of novel avian paramyxovirus strain APMV/Shimane67 isolated from migratory wild geese in Japan. |  
      
      | Journal | J Vet Med Sci. 2015 Sep;77(9):1079-85. |  
      
    
    
       
      | Comment | Culture cell line: DF-1, MDCK, MDBK, BHK, Vero, 293 cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avian paramyxovirus 15 [TAX:1983777] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus peixense; Avian metaavulavirus 15 | 
|---|
 | RefSeq | 
Avian paramyxovirus 15 isolate APMV-15/calidris_fuscicollis/Brazil/RS-1177/2012, partial genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 28486490 |  
      | Authors | Thomazelli LM, de Araújo J, Fabrizio T, Walker D, Reischak D, Ometto T, Barbosa CM, Petry MV, Webby RJ, Durigon EL |  
      | Title | Novel avian paramyxovirus (APMV-15) isolated from a migratory bird in South America. |  
      
      | Journal | PLoS One. 2017;12(5):e0177214. |  
      
    
    
       
      | Comment | Culture cell line: embryonating chicken eggs |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avian paramyxovirus 16 [TAX:2560322] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus upoense | 
|---|
 | RefSeq | 
Avian paramyxovirus UPO216 isolate APMV-15/WB/Kr/UPO216/2014, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 28529504 |  
      | Authors | Lee HJ, Kim JY, Lee YJ, Lee EK, Song BM, Lee HS, Choi KS |  
      | Title | A Novel Avian Paramyxovirus (Putative Serotype 15) Isolated from Wild Birds. |  
      
      | Journal | Front Microbiol. 2017;8:786. |  
      
    
    
       
      | Comment | Culture cell line: embryonated chicken eggs |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avian paramyxovirus 2 [TAX:2560313] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus procarduelis; Metaavulavirus yucaipaense | 
|---|
 | RefSeq | 
Avian paramyxovirus 2 strain APMV-2/Chicken/California/Yucaipa/56, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 18603323 |  
      | Authors | Subbiah M, Xiao S, Collins PL, Samal SK |  
      | Title | Complete sequence of the genome of avian paramyxovirus type 2 (strain Yucaipa) and comparison with other paramyxoviruses. |  
      
      | Journal | Virus Res. 2008 Oct;137(1):40-8. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | avian paramyxovirus 6 [TAX:2560316] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus calidris; Metaavulavirus hongkongense | 
|---|
 | RefSeq | 
Avian paramyxovirus 6 strain APMV-6/Goose/FarEast/4440/2003, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 20206652 |  
      | Authors | Xiao S, Subbiah M, Kumar S, De Nardi R, Terregino C, Collins PL, Samal SK |  
      | Title | Complete genome sequences of avian paramyxovirus serotype 6 prototype strain Hong Kong and a recent novel strain from Italy: evidence for the existence of subgroups within the serotype. |  
      
      | Journal | Virus Res. 2010 Jun;150(1-2):61-72. |  
      
    
    
       
      | Comment | Culture cell line: embryonated chicken eggs |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avian paramyxovirus 8 [TAX:2560318] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus delawarense | 
|---|
 | RefSeq | 
Avian paramyxovirus 8 strain goose/Delaware/1053/76, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 19341613 |  
      | Authors | Paldurai A, Subbiah M, Kumar S, Collins PL, Samal SK |  
      | Title | Complete genome sequences of avian paramyxovirus type 8 strains goose/Delaware/1053/76 and pintail/Wakuya/20/78. |  
      
      | Journal | Virus Res. 2009 Jun;142(1-2):144-53. |  
      
    
    
       
      | Comment | Culture cell line: embryonated specific pathogen free chicken eggs, chicken embryo kidney cells, 293T cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avian paramyxovirus 9 [TAX:2560326] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus newyorkense | 
|---|
 | RefSeq | 
Avian paramyxovirus 9 strain duck/New York/22/1978, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 19185593 |  
      | Authors | Samuel AS, Kumar S, Madhuri S, Collins PL, Samal SK |  
      | Title | Complete sequence of the genome of avian paramyxovirus type 9 and comparison with other paramyxoviruses. |  
      
      | Journal | Virus Res. 2009 Jun;142(1-2):10-8. |  
      
    
    
       
      | Comment | Culture cell line: SPF embryonated chicken eggs, CEK, DF-1, Vero, BHK21 cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian retrovirus IC10 [TAX:11874] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; unclassified Alpharetrovirus | 
|---|
 | GenBank | 
Avian Retrovirus IC10 proviral genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 2537952 |  
      | Authors | Eychène A, Marx M, Dezélée P, Calothy G |  
      | Title | Complete nucleotide sequence of IC10, a retrovirus containing the Rmil oncogene transduced in chicken neuroretina cells infected with avian retrovirus RAV-1. |  
      
      | Journal | Nucleic Acids Res. 1989 Feb 11;17(3):1250. |  
      
    
    
       
      | Comment | Culture cell line: chicken neuroretina cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avian sarcoma virus CT10 [TAX:11878] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avisar10 | 
|---|
 | RefSeq | 
Avian sarcoma virus CT10 genomic sequence. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 2450282 |  
      | Authors | Mayer BJ, Hamaguchi M, Hanafusa H |  
      | Title | A novel viral oncogene with structural similarity to phospholipase C. |  
      
      | Journal | Nature. 1988 Mar 17;332(6161):272-5. |  
      
    
    
       
      | Comment | Culture cell line: CEF, QT6 cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avihepatovirus A1 [TAX:1006061] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avihepatovirus; Avihepatovirus ahepati; Avihepatovirus A | 
|---|
 | RefSeq | 
Duck hepatitis A virus 1 strain R85952, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 17030865 |  
      | Authors | Kim MC, Kwon YK, Joh SJ, Lindberg AM, Kwon JH, Kim JH, Kim SJ |  
      | Title | Molecular analysis of duck hepatitis virus type 1 reveals a novel lineage close to the genus Parechovirus in the family Picornaviridae. |  
      
      | Journal | J Gen Virol. 2006 Nov;87(Pt 11):3307-16. |  
      
    
    
       
      | Comment | laboratory host: Labo9-day-old embryonated chicken eggs |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avisivirus B1 [TAX:1534545] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avisivirus; Avisivirus begallu; Avisivirus B | 
|---|
 | RefSeq | 
Chicken picornavirus 2 isolate 44C, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | avisivirus C1 [TAX:1534546] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avisivirus; Avisivirus cechici; Avisivirus C | 
|---|
 | RefSeq | 
Chicken picornavirus 3 isolate 45C, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Avisivirus Pf-CHK1/AsV [TAX:1766559] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avisivirus; unclassified Avisivirus | 
|---|
 | RefSeq | 
Avisivirus Pf-CHK1/AsV, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 26707271 |  
      | Authors | Boros Á, Pankovics P, Adonyi Á, Fenyvesi H, Day JM, Phan TG, Delwart E, Reuter G |  
      | Title | A diarrheic chicken simultaneously co-infected with multiple picornaviruses: Complete genome analysis of avian picornaviruses representing up to six genera. |  
      
      | Journal | Virology. 2016 Feb;489:63-74. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Budgerigar fledgling disease virus - 1 [TAX:133789] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Gammapolyomavirus; Gammapolyomavirus avis | 
|---|
 | RefSeq | 
Budgerigar fledgling disease virus - 1, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 2838972 |  
      | Authors | Rott O, Kröger M, Müller H, Hobom G |  
      | Title | The genome of budgerigar fledgling disease virus, an avian polyomavirus. |  
      
      | Journal | Virology. 1988 Jul;165(1):74-86. |  
      
    
    
       
      | Comment | chicken |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Calicivirus chicken/V0021/Bayern/2004 [TAX:889389] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Bavovirus; Bavovirus bavariaense | 
|---|
 | RefSeq | 
Calicivirus chicken/V0021/Bayern/2004, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken anemia virus [TAX:12618] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Commensaviricota; Cardeaviricetes; Sanitavirales; Anelloviridae; Gyrovirus; Gyrovirus chickenanemia | 
|---|
 | RefSeq | 
Chicken anemia virus, complete genome. | 
|---|
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken associated cyclovirus 1 [TAX:2050596] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus adie | 
|---|
 | GenBank | 
Chicken associated cyclovirus 1 isolate NGchicken8, complete genome. | 
|---|
 
  | Evidence | GenBank |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken associated cyclovirus 2 [TAX:2109365] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus naahoohai | 
|---|
 | RefSeq | 
Chicken associated cyclovirus 2 strain RS/BR/2015/4R, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken associated huchismacovirus 1 [TAX:2169932] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus; Huchismacovirus chicas1 | 
|---|
 | RefSeq | 
Chicken associated huchismacovirus 1, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 28100302 |  
      | Authors | Lima DA, Cibulski SP, Finkler F, Teixeira TF, Varela APM, Cerva C, Loiko MR, Scheffer CM, Dos Santos HF, Mayer FQ, Roehe PM |  
      | Title | Faecal virome of healthy chickens reveals a large diversity of the eukaryote viral community, including novel circular ssDNA viruses. |  
      
      | Journal | J Gen Virol. 2017 Apr;98(4):690-703. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken associated huchismacovirus 2 [TAX:2169933] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus; Huchismacovirus chicas2 | 
|---|
 | RefSeq | 
Chicken associated huchismacovirus 2, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 28100302 |  
      | Authors | Lima DA, Cibulski SP, Finkler F, Teixeira TF, Varela APM, Cerva C, Loiko MR, Scheffer CM, Dos Santos HF, Mayer FQ, Roehe PM |  
      | Title | Faecal virome of healthy chickens reveals a large diversity of the eukaryote viral community, including novel circular ssDNA viruses. |  
      
      | Journal | J Gen Virol. 2017 Apr;98(4):690-703. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken associated smacovirus [TAX:1932006] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus; unclassified Huchismacovirus | 
|---|
 | RefSeq | 
Chicken associated smacovirus strain RS/BR/2015/4, complete genome. 
Chicken associated smacovirus strain RS/BR/2015/1, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken astrovirus [TAX:336959] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Stellavirales; Astroviridae; Avastrovirus; unclassified Avastrovirus | 
|---|
 | RefSeq | 
Chicken astrovirus, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 10954549 |  
      | Authors | Imada T, Yamaguchi S, Mase M, Tsukamoto K, Kubo M, Morooka A |  
      | Title | Avian nephritis virus (ANV) as a new member of the family Astroviridae and construction of infectious ANV cDNA. |  
      
      | Journal | J Virol. 2000 Sep;74(18):8487-93. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken calicivirus [TAX:1172196] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Bavovirus; Bavovirus bavariaense; Bavaria virus | 
|---|
 | RefSeq | 
Chicken calicivirus strain RS/BR/2015, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 28100302 |  
      | Authors | Lima DA, Cibulski SP, Finkler F, Teixeira TF, Varela APM, Cerva C, Loiko MR, Scheffer CM, Dos Santos HF, Mayer FQ, Roehe PM |  
      | Title | Faecal virome of healthy chickens reveals a large diversity of the eukaryote viral community, including novel circular ssDNA viruses. |  
      
      | Journal | J Gen Virol. 2017 Apr;98(4):690-703. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken chapparvovirus 2 [TAX:2109367] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Hamaparvovirinae; Chaphamaparvovirus; Chaphamaparvovirus galliform2 | 
|---|
 | RefSeq | 
Chicken chapparvovirus 2 strain RS/BR/15/2S NS1 (QKJ70_gp1) and capsid protein (QKJ70_gp2) genes, complete cds. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | chicken chapparvovirus HK [TAX:2849623] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Hamaparvovirinae; Chaphamaparvovirus; Chaphamaparvovirus galliform3 | 
|---|
 | RefSeq | 
Chicken chapparvovirus HK isolate ParvoQ45/2013 NS1 (NS1) gene, complete cds. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken genomovirus mg4_1165 [TAX:2720941] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga5 | 
|---|
 | RefSeq | 
Chicken genomovirus mg4_1165, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken genomovirus mg4_1173 [TAX:2720942] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga3 | 
|---|
 | RefSeq | 
Chicken genomovirus mg4_1173, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken genomovirus mg4_1218 [TAX:2720945] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus galga3 | 
|---|
 | RefSeq | 
Chicken genomovirus mg4_1218, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken genomovirus mg4_1247 [TAX:2720946] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga1 | 
|---|
 | RefSeq | 
Chicken genomovirus mg4_1247, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken genomovirus mg7_73 [TAX:2720949] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus galga1 | 
|---|
 | RefSeq | 
Chicken genomovirus mg7_73, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken genomovirus mg7_78 [TAX:2720951] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga4 | 
|---|
 | RefSeq | 
Chicken genomovirus mg7_78, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken genomovirus mg8_401 [TAX:2720952] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus galga2 | 
|---|
 | RefSeq | 
Chicken genomovirus mg8_401, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken orivirus 1 [TAX:1565990] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Orivirus; Orivirus aoroshaza; Orivirus A | 
|---|
 | RefSeq | 
Chicken orivirus 1 strain chicken/Pf-CHK1/2013/HUN, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken parvovirus [TAX:1136878] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Aveparvovirus; Aveparvovirus galliform1 | 
|---|
 | GenBank | 
Chicken parvovirus isolate ADL120686, complete genome. | 
|---|
 
  | Evidence | GenBank |  
    | Evidence | Literature |  
    
      | Reference | PMID: 25510852 |  
      | Authors | Koo BS, Lee HR, Jeon EO, Han MS, Min KC, Lee SB, Bae YJ, Cho SH, Mo JS, Kwon HM, Sung HW, Kim JN, Mo IP |  
      | Title | Genetic characterization of three novel chicken parvovirus strains based on analysis of their coding sequences. |  
      
      | Journal | Avian Pathol. 2015;44(1):28-34. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken parvovirus ABU-P1 [TAX:717641] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Aveparvovirus; Aveparvovirus galliform1 | 
|---|
 | RefSeq | 
Chicken parvovirus ABU-P1, complete genome. | 
|---|
 
  | Evidence | UniProt |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken picobirnavirus [TAX:1930304] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Picobirnaviridae; Orthopicobirnavirus; unclassified Orthopicobirnavirus | 
|---|
 | RefSeq | 
Chicken picobirnavirus strain PBV/CHK/M3841/HUN/2011 segment RNA1, complete sequence. 
Chicken picobirnavirus strain PBV/CHK/M3841/HUN/2011 segment RNA2, complete sequence. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 30191372 |  
      | Authors | Pankovics P, Boros Á, Nemes C, Kapusinszky B, Delwart E, Reuter G |  
      | Title | Molecular characterization of a novel picobirnavirus in a chicken. |  
      
      | Journal | Arch Virol. 2018 Dec;163(12):3455-3458. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken picornavirus 1 [TAX:1534544] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; unclassified Picornaviridae | 
|---|
 | RefSeq | 
Chicken picornavirus 1 isolate 55C, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken picornavirus 4 [TAX:1534547] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; unclassified Picornaviridae | 
|---|
 | RefSeq | 
Chicken picornavirus 4 isolate 5C, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken smacovirus mg4_881 [TAX:2720958] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas2 | 
|---|
 | RefSeq | 
Chicken smacovirus mg4_881, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken smacovirus mg4_885 [TAX:2720959] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas4 | 
|---|
 | RefSeq | 
Chicken smacovirus mg4_885, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken smacovirus mg4_964 [TAX:2720960] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas6 | 
|---|
 | RefSeq | 
Chicken smacovirus mg4_964, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken smacovirus mg5_1081 [TAX:2720961] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas7 | 
|---|
 | RefSeq | 
Chicken smacovirus mg5_1081, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken smacovirus mg5_1212 [TAX:2720962] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas3 | 
|---|
 | RefSeq | 
Chicken smacovirus mg5_1212, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken smacovirus mg7_67 [TAX:2720966] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas5 | 
|---|
 | RefSeq | 
Chicken smacovirus mg7_67, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
 
 
 
| Scientific Name | Chicken stool-associated gemycircularvirus [TAX:1930298] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga2 | 
|---|
 | RefSeq | 
Chicken stool-associated gemycircularvirus strain RS/BR/2015, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Chicken virus mg5_2876 [TAX:2720907] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Rivendellvirales; Naryaviridae; Nauglamirvirus; Nauglamirvirus anduin | 
|---|
 | RefSeq | 
Chicken virus mg5_2876, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 34946202 |  
      | Authors | Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A |  
      | Title | Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs. |  
      
      | Journal | Microorganisms. 2021 Dec 16;9(12). |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Circovirus NGchicken38/NGA/2009 [TAX:942030] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; Circovirus pigeon; Pigeon circovirus | 
|---|
 | GenBank | 
Circovirus NGchicken38/NGA/2009 isolate NGchicken38, complete genome. | 
|---|
 
  | Evidence | GenBank |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Cotia virus [TAX:39444] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Oryzopoxvirus; Oryzopoxvirus cotia | 
|---|
 | GenBank | 
Cotia virus, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 22345477 |  
      | Authors | Afonso PP, Silva PM, Schnellrath LC, Jesus DM, Hu J, Yang Y, Renne R, Attias M, Condit RC, Moussatché N, Damaso CR |  
      | Title | Biological characterization and next-generation genome sequencing of the unclassified Cotia virus SPAn232 (Poxviridae). |  
      
      | Journal | J Virol. 2012 May;86(9):5039-54. |  
      
    
    
       
      | Comment | Culture cell line:BSC-40, C6, RK-13, L-929, Hep-2, MEF, Vero, CEF |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Cyclovirus NGchicken15/NGA/2009 [TAX:942037] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus adie; Chicken associated cyclovirus 1 | 
|---|
 | RefSeq | 
Cyclovirus NGchicken15/NGA/2009, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Cyclovirus NGchicken8/NGA/2009 [TAX:942036] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus adie; Chicken associated cyclovirus 1 | 
|---|
 | RefSeq | 
Cyclovirus NGchicken8/NGA/2009 isolate NGchicken8, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Duck atadenovirus A [TAX:130328] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Polisuviricotina; Pharingeaviricetes; Rowavirales; Adenoviridae; Barthadenovirus; Barthadenovirus galloanserae | 
|---|
 | RefSeq | 
Duck adenovirus A, complete genome. 
Duck adenovirus A, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 9375018 |  
      | Authors | Hess M, Blöcker H, Brandt P |  
      | Title | The complete nucleotide sequence of the egg drop syndrome virus: an intermediate between mastadenoviruses and aviadenoviruses. |  
      
      | Journal | Virology. 1997 Nov 10;238(1):145-56. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | enterovirus D70 [TAX:12090] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; unclassified Ensavirinae; Enterovirus; Enterovirus deconjuncti; Enterovirus D | 
|---|
 | GenBank | 
Human enterovirus 70 genomic RNA, complete genome, strain: J670/71. | 
|---|
 | KEGG DISEASE | 
Acute hemorrhagic conjunctivitis | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 2172447 |  
      | Authors | Ryan MD, Jenkins O, Hughes PJ, Brown A, Knowles NJ, Booth D, Minor PD, Almond JW |  
      | Title | The complete nucleotide sequence of enterovirus type 70: relationships with other members of the picornaviridae. |  
      
      | Journal | J Gen Virol. 1990 Oct;71 ( Pt 10):2291-9. |  
      
    
    
       
      | Comment | Culture cell line: HEp-2c cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Faeces associated gemycircularvirus 17 [TAX:1843737] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus chicas2; Chicken associated gemycircularvirus 2 | 
|---|
 | RefSeq | 
Faeces associated gemycircularvirus 17 isolate 27_Fec16497_chicken, complete sequence. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Faeces associated gemycircularvirus 20 [TAX:1843740] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus chicas1; Chicken associated gemycircularvirus 1 | 
|---|
 | RefSeq | 
Faeces associated gemycircularvirus 20 isolate 27_Fec79971_chicken, complete sequence. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Flamingopox virus FGPVKD09 [TAX:2059380] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Avipoxvirus; unclassified Avipoxvirus | 
|---|
 | RefSeq | 
Flamingopox virus FGPVKD09, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 29207949 |  
      | Authors | Carulei O, Douglass N, Williamson AL |  
      | Title | Comparative analysis of avian poxvirus genomes, including a novel poxvirus from lesser flamingos (Phoenicopterus minor), highlights the lack of conservation of the central region. |  
      
      | Journal | BMC Genomics. 2017 Dec 6;18(1):947. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Fowl adenovirus 9 [TAX:172864] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Polisuviricotina; Pharingeaviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus gallinae; Fowl aviadenovirus D | 
|---|
 | GenBank | 
Fowl adenovirus 9, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 12441071 |  
      | Authors | Ojkic D, Krell PJ, Nagy E |  
      | Title | Unique features of fowl adenovirus 9 gene transcription. |  
      
      | Journal | Virology. 2002 Oct 25;302(2):274-85. |  
      
    
    
       
      | Comment | Culture cell line: CH-SAH cells |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Fowl aviadenovirus 1 [TAX:10553] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Polisuviricotina; Pharingeaviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus ventriculi; Fowl aviadenovirus A | 
|---|
 | GenBank | 
Avian adenovirus CELO, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 8627769 |  
      | Authors | Chiocca S, Kurzbauer R, Schaffner G, Baker A, Mautner V, Cotten M |  
      | Title | The complete DNA sequence and genomic organization of the avian adenovirus CELO. |  
      
      | Journal | J Virol. 1996 May;70(5):2939-49. |  
      
    
    
       
      | Comment | Culture cell line: chicken embryos |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Fowl aviadenovirus 5 [TAX:172861] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Polisuviricotina; Pharingeaviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus quintum; Fowl aviadenovirus B | 
|---|
 | RefSeq | 
Fowl adenovirus 5 strain 340, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Fowl aviadenovirus 6 [TAX:172862] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Polisuviricotina; Pharingeaviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus hepatitidis; Fowl aviadenovirus E | 
|---|
 | RefSeq | 
Fowl adenovirus 6 strain CR119, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Fowl aviadenovirus A [TAX:190061] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Polisuviricotina; Pharingeaviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus ventriculi | 
|---|
 | RefSeq | 
Fowl adenovirus A, complete genome. 
Fowl adenovirus A, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 8627769 |  
      | Authors | Chiocca S, Kurzbauer R, Schaffner G, Baker A, Mautner V, Cotten M |  
      | Title | The complete DNA sequence and genomic organization of the avian adenovirus CELO. |  
      
      | Journal | J Virol. 1996 May;70(5):2939-49. |  
      
    
    
       
      | Comment | chicken embryo Culture cell line:chicken embryo
 |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Fowl aviadenovirus C [TAX:190063] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Polisuviricotina; Pharingeaviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus hydropericardii | 
|---|
 | RefSeq | 
Fowl adenovirus C, complete genome. 
Fowl adenovirus C complete genome, isolate KR5. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Fowl aviadenovirus D [TAX:190064] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Polisuviricotina; Pharingeaviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus gallinae | 
|---|
 | RefSeq | 
Fowl adenovirus D, complete genome. 
Fowl adenovirus D, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 9780058 |  
      | Authors | Cao JX, Krell PJ, Nagy E |  
      | Title | Sequence and transcriptional analysis of terminal regions of the fowl adenovirus type 8 genome. |  
      
      | Journal | J Gen Virol. 1998 Oct;79 ( Pt 10):2507-16. |  
      
    
    
       
      | Comment | Culture cell line: CH-SAH cell Culture cell line: CH-SAH cells
 |  
    | Evidence | Literature |  
    
      | Reference | PMID: 12441071 |  
      | Authors | Ojkic D, Krell PJ, Nagy E |  
      | Title | Unique features of fowl adenovirus 9 gene transcription. |  
      
      | Journal | Virology. 2002 Oct 25;302(2):274-85. |  
      
    
    
       
      | Comment | Culture cell line: CH-SAH cell Culture cell line: CH-SAH cells
 |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Fowl aviadenovirus E [TAX:190065] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Polisuviricotina; Pharingeaviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus hepatitidis | 
|---|
 | RefSeq | 
Fowl adenovirus E, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Fowlpox virus [TAX:10261] | 
|---|
 | Lineage | Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Avipoxvirus; Avipoxvirus fowlpox | 
|---|
 | RefSeq | 
Fowlpox virus, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 10729156 |  
      | Authors | Afonso CL, Tulman ER, Lu Z, Zsak L, Kutish GF, Rock DL |  
      | Title | The genome of fowlpox virus. |  
      
      | Journal | J Virol. 2000 Apr;74(8):3815-31. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Fujinami sarcoma virus [TAX:11885] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avifujsar | 
|---|
 | RefSeq | 
Fujinami sarcoma virus, complete genome. | 
|---|
 
  | Evidence | UniProt |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Gallid alphaherpesvirus 1 [TAX:10386] | 
|---|
 | Lineage | Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Iltovirus; Iltovirus gallidalpha1 | 
|---|
 | RefSeq | 
Gallid herpesvirus 1, complete genome. 
Gallid herpesvirus 1 strain SA2, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
  | Evidence | UniProt |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Gallid alphaherpesvirus 2 [TAX:10390] | 
|---|
 | Lineage | Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha2 | 
|---|
 | RefSeq | 
Gallid herpesvirus 2, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
  | Evidence | UniProt |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Gallid alphaherpesvirus 3 [TAX:35250] | 
|---|
 | Lineage | Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha3 | 
|---|
 | RefSeq | 
Gallid herpesvirus 3, complete genome. 
Gallid herpesvirus 3 strain SB-1, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Gallid herpesvirus 2 strain 814 [TAX:1123959] | 
|---|
 | Lineage | Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha2; Gallid alphaherpesvirus 2 | 
|---|
 | GenBank | 
Gallid herpesvirus 2 strain 814, complete genome. | 
|---|
 
  | Evidence | GenBank |  
    | Evidence | Literature |  
    
      | Reference | PMID: 21984218 |  
      | Authors | Zhang F, Liu CJ, Zhang YP, Li ZJ, Liu AL, Yan FH, Cong F, Cheng Y |  
      | Title | Comparative full-length sequence analysis of Marek's disease virus vaccine strain 814. |  
      
      | Journal | Arch Virol. 2012 Jan;157(1):177-83. |  
      
    
    
       
      | Comment | Culture cell line: chicken embryo fibroblasts |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | gallivirus A1 [TAX:2764087] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Gallivirus; Gallivirus afowli; Gallivirus A | 
|---|
 | RefSeq | 
Gallivirus A1 isolate 518C, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 24906980 |  
      | Authors | Lau SKP, Woo PCY, Yip CCY, Li KSM, Fan RYY, Bai R, Huang Y, Chan KH, Yuen KY |  
      | Title | Chickens host diverse picornaviruses originated from potential interspecies transmission with recombination. |  
      
      | Journal | J Gen Virol. 2014 Sep;95(Pt 9):1929-1944. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Gallivirus Pf-CHK1/GV [TAX:1766557] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Gallivirus; unclassified Gallivirus | 
|---|
 | RefSeq | 
Gallivirus Pf-CHK1/GV, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Gallus gallus enteric parvovirus [TAX:1633569] | 
|---|
 | Lineage | Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Aveparvovirus; Aveparvovirus galliform1 | 
|---|
 | GenBank | 
Gallus gallus enteric parvovirus isolate ChPV 367, complete genome. | 
|---|
 
  | Evidence | GenBank |  
    | Evidence | Literature |  
    
      | Reference | PMID: 26292551 |  
      | Authors | Zsak L, Cha RM, Li F, Day JM |  
      | Title | Host Specificity and Phylogenetic Relationships of Chicken and Turkey Parvoviruses. |  
      
      | Journal | Avian Dis. 2015 Mar;59(1):157-61. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Goose paramyxovirus SF02 [TAX:204987] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; unclassified Avulavirinae | 
|---|
 | RefSeq | 
Goose paramyxovirus SF02, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 15744558 |  
      | Authors | Zou J, Shan S, Yao N, Gong Z |  
      | Title | Complete genome sequence and biological characterizations of a novel goose paramyxovirus-SF02 isolated in China. |  
      
      | Journal | Virus Genes. 2005 Jan;30(1):13-21. |  
      
    
    
       
      | Comment | Chicken |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Infectious bronchitis virus [TAX:11120] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Gammacoronavirus galli; Avian coronavirus | 
|---|
 | RefSeq | 
Avian infectious bronchitis virus, complete genome. 
Infectious bronchitis virus isolate Ind-TN92-03, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
  | Evidence | UniProt |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Infectious bronchitis virus ITA/90254/2005 [TAX:658929] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Gammacoronavirus galli; Avian coronavirus; Infectious bronchitis virus | 
|---|
 | GenBank | 
Infectious bronchitis virus ITA/90254/2005, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 19625463 |  
      | Authors | Ducatez MF, Martin AM, Owoade AA, Olatoye IO, Alkali BR, Maikano I, Snoeck CJ, Sausy A, Cordioli P, Muller CP |  
      | Title | Characterization of a new genotype and serotype of infectious bronchitis virus in Western Africa. |  
      
      | Journal | J Gen Virol. 2009 Nov;90(Pt 11):2679-85. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Infectious bronchitis virus NGA/A116E7/2006 [TAX:658930] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Gammacoronavirus galli; Avian coronavirus; Infectious bronchitis virus | 
|---|
 | GenBank | 
Infectious bronchitis virus NGA/A116E7/2006, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 19625463 |  
      | Authors | Ducatez MF, Martin AM, Owoade AA, Olatoye IO, Alkali BR, Maikano I, Snoeck CJ, Sausy A, Cordioli P, Muller CP |  
      | Title | Characterization of a new genotype and serotype of infectious bronchitis virus in Western Africa. |  
      
      | Journal | J Gen Virol. 2009 Nov;90(Pt 11):2679-85. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Infectious bursal disease virus [TAX:10995] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Birnaviridae; Avibirnavirus; Avibirnavirus gumboroense | 
|---|
 | RefSeq | 
Infectious bursal disease virus RNA for small ORF (P2). 
Infectious bursal disease virus RNA for possible polymerase (P2). | 
|---|
 
  | Evidence | RefSeq |  
  | Evidence | UniProt |  
    | Evidence | Literature |  
    
      | Reference | PMID: 7747460 |  
      | Authors | Mundt E, Müller H |  
      | Title | Complete nucleotide sequences of 5'- and 3'-noncoding regions of both genome segments of different strains of infectious bursal disease virus. |  
      
      | Journal | Virology. 1995 May 10;209(1):10-8. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) [TAX:183764] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus influenzae; Influenza A virus; H1N1 subtype; Influenza A virus (A/Puerto Rico/8/1934(H1N1)) | 
|---|
 | GenBank | 
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 1, complete sequence. 
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 2, complete sequence. 
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 3, complete sequence. 
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 4, complete sequence. 
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 5, complete sequence. 
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 6, complete sequence. 
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 7, complete sequence. 
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 8, complete sequence. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 11779399 |  
      | Authors | Schickli JH, Flandorfer A, Nakaya T, Martinez-Sobrido L, García-Sastre A, Palese P |  
      | Title | Plasmid-only rescue of influenza A virus vaccine candidates. |  
      
      | Journal | Philos Trans R Soc Lond B Biol Sci. 2001 Dec 29;356(1416):1965-73. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Marek's disease virus serotype 2 MDV2 [TAX:36353] | 
|---|
 | Lineage | Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha3; Gallid alphaherpesvirus 3 | 
|---|
 | GenBank | 
Gallid herpesvirus 1 (serotype 2) DNA, UL region complete sequence. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 10458102 |  
      | Authors | Kato K, Jang HK, Izumiya Y, Cai JS, Tsushima Y, Miyazawa T, Kai C, Mikami T |  
      | Title | Identification and sequence analysis of the Marek's disease virus serotype 2 homologous genes of the herpes simplex virus type 1 UL25, UL26 and UL26.5 genes. |  
      
      | Journal | J Vet Med Sci. 1999 Jul;61(7):787-93. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | megrivirus C1 [TAX:1477515] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Megrivirus; Megrivirus chigalli; Megrivirus C | 
|---|
 | RefSeq | 
Chicken megrivirus strain chicken/B21-CHV/2012/HUN, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 24672039 |  
      | Authors | Boros Á, Pankovics P, Knowles NJ, Nemes C, Delwart E, Reuter G |  
      | Title | Comparative complete genome analysis of chicken and Turkey megriviruses (family picornaviridae): long 3' untranslated regions with a potential second open reading frame and evidence for possible recombination. |  
      
      | Journal | J Virol. 2014 Jun;88(11):6434-43. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | megrivirus C2 [TAX:2847848] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Megrivirus; Megrivirus chigalli; Megrivirus C | 
|---|
 | RefSeq | 
Megrivirus C2 isolate 27C, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Meleagrid alphaherpesvirus 1 [TAX:37108] | 
|---|
 | Lineage | Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus meleagridalpha1 | 
|---|
 | RefSeq | 
Meleagrid herpesvirus 1, complete genome. | 
|---|
 
  | Evidence | UniProt |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Mumps virus strain L-Zagreb [TAX:301186] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Rubulavirinae; Orthorubulavirus; Orthorubulavirus parotitidis; Mumps orthorubulavirus; Mumps virus genotype N | 
|---|
 | GenBank | 
Mumps virus strain L-Zagreb vaccine strain, complete genome. 
Mumps virus strain L-Zagreb master seed, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
       
      | Reference | Beck, M., Welsz-Malecek, R., Mesko-Prejac, M., Radman, V., Juzbasic, M., Rajninger-Miholic, M., ... & Stainer, D. W. (1989). Mumps vaccine L-Zagreb, prepared in chick fibroblasts. I. Production and field trials. Journal of biological standardization, 17(1), 85-90. 
 |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Newcastle disease virus B1 [TAX:139270] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus javaense; avian paramyxovirus 1 | 
|---|
 | GenBank | 
Newcastle disease virus B1, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 1466491 |  
      | Authors | Ahmad J, Sharma JM |  
      | Title | Evaluation of a modified-live virus vaccine administered in ovo to protect chickens against Newcastle disease. |  
      
      | Journal | Am J Vet Res. 1992 Nov;53(11):1999-2004. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Orivirus A [TAX:2170052] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Orivirus; Orivirus aoroshaza | 
|---|
 | GenBank | 
Orivirus A strain chicken/Pf-CHK1/2013/HUN, complete genome. | 
|---|
 
  | Evidence | GenBank |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Parrot bornavirus 1 [TAX:1548714] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Bornaviridae; Orthobornavirus; Orthobornavirus alphapsittaciforme | 
|---|
 | RefSeq | 
Parrot bornavirus 1 strain M25 N protein (N), X protein (X), P protein (P), matrix protein (M), glycoprotein (G), and viral polymerase (L) genes, complete cds. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 27100150 |  
      | Authors | Piepenbring AK, Enderlein D, Herzog S, Al-Ibadi B, Heffels-Redmann U, Heckmann J, Lange-Herbst H, Herden C, Lierz M |  
      | Title | Parrot Bornavirus (PaBV)-2 isolate causes different disease patterns in cockatiels than PaBV-4. |  
      
      | Journal | Avian Pathol. 2016;45(2):156-68. |  
      
    
    
       
      | Comment | Culture cell line: CEC-32 |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Parrot bornavirus 4 [TAX:1548718] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Bornaviridae; Orthobornavirus; Orthobornavirus alphapsittaciforme | 
|---|
 | RefSeq | 
Parrot bornavirus 4, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 27100150 |  
      | Authors | Piepenbring AK, Enderlein D, Herzog S, Al-Ibadi B, Heffels-Redmann U, Heckmann J, Lange-Herbst H, Herden C, Lierz M |  
      | Title | Parrot Bornavirus (PaBV)-2 isolate causes different disease patterns in cockatiels than PaBV-4. |  
      
      | Journal | Avian Pathol. 2016;45(2):156-68. |  
      
    
    
       
      | Comment | Culture cell line: CEC-32 |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Paslahepevirus balayani [TAX:1678143] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Hepelivirales; Hepeviridae; Orthohepevirinae; Paslahepevirus | 
|---|
 | RefSeq | 
Paslahepevirus balayani nonstructural protein and structural viral protein genes, complete cds. 
Paslahepevirus balayani isolate AlgSwe2012, partial genome. 
Paslahepevirus balayani isolate little egret/kocsag02/2014/HUN, complete genome. | 
|---|
 
  | Evidence | UniProt |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Pixuna virus [TAX:60876] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus; Alphavirus pixuna | 
|---|
 | RefSeq | 
Pixuna virus strain Pixuna BeAr 35645, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 962587 |  
      | Authors | Jahrling PB, Navarro E, Scherer WF |  
      | Title | Interferon induction and sensitivity as correlates to virulence of Venezuelan encephalitis viruses for hamsters. |  
      
      | Journal | Arch Virol. 1976;51(1-2):23-35. |  
      
    
    
       
      | Comment | Culture cell line: baby hamster kidney-21 cells, chicken-embryonic cell(CEC cells) |  
    | Evidence | Literature |  
    
      | Reference | PMID: 9886206 |  
      | Authors | Kinney RM, Pfeffer M, Tsuchiya KR, Chang GJ, Roehrig JT |  
      | Title | Nucleotide sequences of the 26S mRNAs of the viruses defining the Venezuelan equine encephalitis antigenic complex. |  
      
      | Journal | Am J Trop Med Hyg. 1998 Dec;59(6):952-64. |  
      
    
    
       
      | Comment | Culture cell line: baby hamster kidney-21 cells, chicken-embryonic cell(CEC cells) |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Reticuloendotheliosis virus [TAX:11636] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Gammaretrovirus aviretend | 
|---|
 | RefSeq | 
Reticuloendotheliosis virus strain HA9901 from China, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Rotavirus D chicken/05V0049/DEU/2005 [TAX:884200] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; unclassified Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus deltagastroenteritidis; Rotavirus D | 
|---|
 | RefSeq | 
Rotavirus D chicken/05V0049/DEU/2005 segment 1, complete genome. 
Rotavirus D chicken/05V0049/DEU/2005 segment 2, complete genome. 
Rotavirus D chicken/05V0049/DEU/2005 segment 3, complete genome. 
Rotavirus D chicken/05V0049/DEU/2005 segment 4, complete genome. 
Rotavirus D chicken/05V0049/DEU/2005 segment 5, complete genome. 
Rotavirus D chicken/05V0049/DEU/2005 segment 6, complete genome. 
Rotavirus D chicken/05V0049/DEU/2005 segment 7, complete genome. 
Rotavirus D chicken/05V0049/DEU/2005 segment 8, complete genome. 
Rotavirus D chicken/05V0049/DEU/2005 segment 9, complete genome. 
Rotavirus D chicken/05V0049/DEU/2005 segment 10, complete genome. 
Rotavirus D chicken/05V0049/DEU/2005 segment 11, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Rotavirus F chicken/03V0568/DEU/2003 [TAX:994994] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; unclassified Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus phigastroenteritidis; Rotavirus F | 
|---|
 | RefSeq | 
Rotavirus F chicken/03V0568/DEU/2003 segment 1, complete sequence. 
Rotavirus F chicken/03V0568/DEU/2003 segment 2, complete sequence. 
Rotavirus F chicken/03V0568/DEU/2003 segment 9, complete sequence. 
Rotavirus F chicken/03V0568/DEU/2003 segment 8, complete sequence. 
Rotavirus F chicken/03V0568/DEU/2003 segment 10, complete sequence. 
Rotavirus F chicken/03V0568/DEU/2003 segment 4, complete sequence. 
Rotavirus F chicken/03V0568/DEU/2003 segment 3, complete sequence. 
Rotavirus F chicken/03V0568/DEU/2003 segment 5, complete sequence. 
Rotavirus F chicken/03V0568/DEU/2003 segment 7, complete sequence. 
Rotavirus F chicken/03V0568/DEU/2003 segment 11, complete sequence. 
Rotavirus F chicken/03V0568/DEU/2003 segment 6, complete sequence. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Rotavirus G chicken/03V0567/DEU/2003 [TAX:994995] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; unclassified Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus gammagastroenteritidis; Rotavirus G | 
|---|
 | RefSeq | 
Rotavirus G chicken/03V0567/DEU/2003 segment 2, complete sequence. 
Rotavirus G chicken/03V0567/DEU/2003 segment 3, complete sequence. 
Rotavirus G chicken/03V0567/DEU/2003 segment 9, complete sequence. 
Rotavirus G chicken/03V0567/DEU/2003 segment 5, complete sequence. 
Rotavirus G chicken/03V0567/DEU/2003 segment 8, complete sequence. 
Rotavirus G chicken/03V0567/DEU/2003 segment 7, complete sequence. 
Rotavirus G chicken/03V0567/DEU/2003 segment 10, complete sequence. 
Rotavirus G chicken/03V0567/DEU/2003 segment 11, complete sequence. 
Rotavirus G chicken/03V0567/DEU/2003 segment 6, complete sequence. 
Rotavirus G chicken/03V0567/DEU/2003 segment 4, complete sequence. 
Rotavirus G chicken/03V0567/DEU/2003 segment 1, complete sequence. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Rous sarcoma virus [TAX:11886] | 
|---|
 | Lineage | Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avirousar | 
|---|
 | RefSeq | 
Rous sarcoma virus, complete genome. | 
|---|
 
  | Evidence | UniProt |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Salmonella phage SP1a [TAX:2109652] | 
|---|
 | Lineage | Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Demerecviridae; Markadamsvirinae; Tequintavirus; unclassified Tequintavirus | 
|---|
 | GenBank | 
Salmonella phage SP1a clone contig.00001 genomic sequence. 
Salmonella phage SP1a clone contig.00002 genomic sequence. 
Salmonella phage SP1a clone contig.00003 genomic sequence. | 
|---|
 
  | Evidence | GenBank |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Sicinivirus A [TAX:1755588] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Sicinivirus; Sicinivirus ahiberni | 
|---|
 | RefSeq | 
Sicinivirus A strain UCC001, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | sicinivirus A1 [TAX:2773315] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Sicinivirus; Sicinivirus ahiberni; Sicinivirus A | 
|---|
 | RefSeq | 
Sicinivirus A1 isolate JSY, complete genome. | 
|---|
 
  | Evidence | RefSeq |  
    | Evidence | Literature |  
    
      | Reference | PMID: 26461027 |  
      | Authors | Zhou H, Zhu S, Quan R, Wang J, Wei L, Yang B, Xu F, Wang J, Chen F, Liu J |  
      | Title | Identification and Genome Characterization of the First Sicinivirus Isolate from Chickens in Mainland China by Using Viral Metagenomics. |  
      
      | Journal | PLoS One. 2015;10(10):e0139668. |  
      
    
    
  
 | DBLINKS |  | 
|---|
 
 
| Scientific Name | Sitiawan virus [TAX:93923] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus tembusu; Tembusu virus | 
|---|
 | GenBank | 
Sitiawan virus, complete genome. | 
|---|
 
    | Evidence | Literature |  
    
      | Reference | PMID: 22764316 |  
      | Authors | Liu P, Lu H, Li S, Moureau G, Deng YQ, Wang Y, Zhang L, Jiang T, de Lamballerie X, Qin CF, Gould EA, Su J, Gao GF |  
      | Title | Genomic and antigenic characterization of the newly emerging Chinese duck egg-drop syndrome flavivirus: genomic comparison with Tembusu and Sitiawan viruses. |  
      
      | Journal | J Gen Virol. 2012 Oct;93(Pt 10):2158-70. |  
      
    
    
       
      | Comment | Source of isolation: Broiler chicken |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Snowshoe hare virus [TAX:11580] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Bunyaviricetes; Elliovirales; Peribunyaviridae; Orthobunyavirus; Orthobunyavirus khatangaense | 
|---|
 | RefSeq | 
Snowshoe hare virus L polyprotein (L) gene, complete cds. 
Snowshoe hare virus segment M G1/G2 membrane polyprotein gene, complete cds. 
Snowshoe hare virus segment small, complete sequence. | 
|---|
 
  | Evidence | UniProt |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | Sunguru virus [TAX:1491491] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Sunrhavirus; Sunrhavirus sunguru | 
|---|
 | RefSeq | 
Sunguru virus isolate Ug#41, complete genome. | 
|---|
 
  | Evidence | RefSeq |  | DBLINKS |  | 
|---|
 
 
| Scientific Name | tremovirus A1 [TAX:2871093] | 
|---|
 | Lineage | Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Heptrevirinae; Tremovirus; Tremovirus aetremori; Tremovirus A | 
|---|
 | RefSeq | 
Avian encephalomyelitis virus, complete genome. | 
|---|
 
  | Evidence | UniProt |  | DBLINKS |  | 
|---|
 
 |