Gallus gallus

Scientific NameGallus gallus [TAX:9031]
Lineagecellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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KEGG GENOME:  

Known viruses (150)
Scientific NameAmphotropic murine leukemia virus [TAX:188539]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; unclassified Murine leukemia virus
GenBank
Amphotropic murine leukemia virus strain 1313, complete genome.
Evidence Literature
   Reference PMID: 17147829
      Authors Howard TM, Sheng Z, Wang M, Wu Y, Rasheed S
      Title Molecular and phylogenetic analyses of a new amphotropic murine leukemia virus (MuLV-1313).
      Journal Virol J. 2006 Dec 5;3:101.
   Comment Culture cell line: RD cells, chicken embryo cells, rat embryo cells
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Scientific NameAnaconda paramyxovirus [TAX:1529450]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Ferlavirus; Ferlavirus reptilis
GenBank
Anaconda paramyxovirus isolate RF111111, complete genome.
Evidence Literature
   Reference PMID: 25078906
      Authors Woo PC, Lau SK, Martelli P, Hui SW, Lau CC, Fan RY, Groff JM, Tam EW, Chan KH, Yuen KY
      Title Fatal systemic necrotizing infections associated with a novel paramyxovirus, anaconda paramyxovirus, in green anaconda juveniles.
      Journal J Clin Microbiol. 2014 Oct;52(10):3614-23.
   Comment Culture cell line: BHK21, HF, Calu-3, A549, Hep-2, Caco-2, HRT-18G, Huh-7, Hela, HEK, NT2, RD, SF268, His-1, MDCK, MDBK, RK13, 3T3, Dubca, LLC-MK2, Vero, VeroE6, CRFK, PK-15, RK3E, RMC,DF-1, C6/36 cells
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Scientific Nameanativirus B1 [TAX:2870379]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Anativirus; Anativirus B
RefSeq
Anativirus B1, complete genome.
Evidence RefSeq
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Scientific NameAvian adeno-associated virus ATCC VR-865 [TAX:219704]
LineageViruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Dependoparvovirus; Dependoparvovirus avian1
RefSeq
Avian adeno-associated virus ATCC VR-865, complete genome.
Evidence Literature
   Reference PMID: 12768000
      Authors Bossis I, Chiorini JA
      Title Cloning of an avian adeno-associated virus (AAAV) and generation of recombinant AAAV particles.
      Journal J Virol. 2003 Jun;77(12):6799-810.
   Comment Culture cell line: CEF, DF-1, LMH, QNR, QT6, Chicken primary embryonic kidney cells, Chicken primary pituitary cells, COS cells
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Scientific NameAvian adeno-associated virus strain DA-1 [TAX:281492]
LineageViruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Dependoparvovirus; Dependoparvovirus avian1
RefSeq
Avian adeno-associated virus strain DA-1, complete genome.
Evidence Literature
   Reference PMID: 15351493
      Authors Estevez C, Villegas P
      Title Sequence analysis, viral rescue from infectious clones and generation of recombinant virions of the avian adeno-associated virus.
      Journal Virus Res. 2004 Oct;105(2):195-208.
   Comment Culture cell line: chicken eggs
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Scientific NameAvian carcinoma virus [TAX:11958]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; unclassified Alpharetrovirus
RefSeq
Avian carcinoma virus, complete genome.
Evidence Literature
   Reference PMID: 2986131
      Authors Hayflick J, Seeburg PH, Ohlsson R, Pfeifer-Ohlsson S, Watson D, Papas T, Duesberg PH
      Title Nucleotide sequence of two overlapping myc-related genes in avian carcinoma virus OK10 and their relation to the myc genes of other viruses and the cell.
      Journal Proc Natl Acad Sci U S A. 1985 May;82(9):2718-22.
Evidence Literature
   Reference PMID: 3016301
      Authors Patschinsky T, Jansen HW, Blöcker H, Frank R, Bister K
      Title Structure and transforming function of transduced mutant alleles of the chicken c-myc gene.
      Journal J Virol. 1986 Aug;59(2):341-53.
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Scientific NameAvian endogenous retrovirus EAV-HP [TAX:93465]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; unclassified Retroviridae; Avian retroviruses
RefSeq
Avian endogenous retrovirus EAV-HP, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 10627540
      Authors Sacco MA, Flannery DM, Howes K, Venugopal K
      Title Avian endogenous retrovirus EAV-HP shares regions of identity with avian leukosis virus subgroup J and the avian retrotransposon ART-CH.
      Journal J Virol. 2000 Feb;74(3):1296-306.
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Scientific NameAvian gyrovirus 2 [TAX:1002273]
LineageViruses; Anelloviridae; Gyrovirus; Gyrovirus galga1
RefSeq
Avian gyrovirus 2, complete genome.
Evidence RefSeq
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Scientific NameAvian hepatitis E virus [TAX:2907992]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Hepelivirales; Hepeviridae; Orthohepevirinae; Avihepevirus; Avihepevirus magniiecur
RefSeq
Avian hepatitis E virus, complete genome.
Evidence UniProt
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Scientific NameAvian infectious bronchitis virus partridge/GD/S14/2003 [TAX:284515]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Avian coronavirus; Infectious bronchitis virus
GenBank
Avian infectious bronchitis virus partridge/GD/S14/2003, complete genome.
Evidence Literature
   Reference PMID: 17037560
      Authors Britton P, Casais R, Hodgson T, Davis M, Cavanagh D
      Title Genes 3 and 5 of infectious bronchitis virus are accessory protein genes.
      Journal Adv Exp Med Biol. 2006;581:363-8.
   Comment Culture cell line: CK cells
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Scientific NameAvian leukemia virus [TAX:11946]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus
RefSeq
Avian leukemia virus isolate SCDY1, complete genome.
Evidence RefSeq
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Scientific NameAvian leukosis virus [TAX:11864]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus
GenBank
Avian leukosis virus strain MQNCSU, complete genome.
Evidence Literature
   Reference Chesters,P.M., Howes,K. and Nair,V. , Isolation and Characterization of an Avian Leukosis Virus from Chicken Macropohage Cell Line MQ-NCSU, Unpublished
   Comment Culture cell line: Chicken Macropohage cells
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Scientific NameAvian leukosis virus - RSA [TAX:363745]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus
RefSeq
Avian leukosis virus - RSA, complete genome.
Evidence Literature
   Reference PMID: 1311072
      Authors Bieth E, Darlix JL
      Title Complete nucleotide sequence of a highly infectious avian leukosis virus.
      Journal Nucleic Acids Res. 1992 Jan 25;20(2):367.
   Comment Culture cell line: chick embryo fibroblasts
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Scientific NameAvian leukosis virus ev/J [TAX:1401444]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus
GenBank
Avian leukosis virus subgroup J isolate PDRC-59831, complete genome.
Evidence GenBank
Evidence Literature
   Reference PMID: 25858851
      Authors Malhotra S, Justice J 4th, Lee N, Li Y, Zavala G, Ruano M, Morgan R, Beemon K
      Title Complete genome sequence of an american avian leukosis virus subgroup j isolate that causes hemangiomas and myeloid leukosis.
      Journal Genome Announc. 2015 Apr 9;3(2).
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Scientific NameAvian myeloblastosis virus [TAX:11866]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus
GenBank
S74099  
Avian myeloblastosis virus p27/CA gene, complete cds; and polyprotein II and v-myb product genes, partial cds.
Evidence Literature
   Reference PMID: 6283631
      Authors Rushlow KE, Lautenberger JA, Papas TS, Baluda MA, Perbal B, Chirikjian JG, Reddy EP
      Title Nucleotide sequence of the transforming gene of avian myeloblastosis virus.
      Journal Science. 1982 Jun 25;216(4553):1421-3.
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Scientific NameAvian myelocytomatosis virus [TAX:11867]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; unclassified Alpharetrovirus
RefSeq
Avian myelocytomatosis virus, complete genome.
Evidence Literature
   Reference PMID: 228482
      Authors Quade K
      Title Transformation of mammalian cells by avian myelocytomatosis virus and avian erythroblastosis virus.
      Journal Virology. 1979 Oct 30;98(2):461-5.
   Comment Culture cell line: chick embryo fibroblasts
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Scientific NameAvian myelocytomatosis virus 29 [TAX:11868]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus
GenBank
Avian myelocytomatosis virus 29, complete genome.
Evidence Literature
   Reference PMID: 6284994
      Authors Vennstrom B, Sheiness D, Zabielski J, Bishop JM
      Title Isolation and characterization of c-myc, a cellular homolog of the oncogene (v-myc) of avian myelocytomatosis virus strain 29.
      Journal J Virol. 1982 Jun;42(3):773-9.
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Scientific NameAvian nephritis virus 1 [TAX:336960]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Stellavirales; Astroviridae; Avastrovirus; Avastrovirus 2
GenBank
Avian nephritis virus 1 from China, complete genome.
Evidence GenBank
Evidence UniProt
Evidence Literature
   Reference PMID: 21500638
      Authors Zhao W, Hua XG, Yuan L, Cui L, Shan TL, Dai XQ, Zhu AL, Yu Y, Zhu CX, Yang ZB
      Title Sequence analyses of the representative Chinese-prevalent strain of avian nephritis virus in healthy chicken flocks.
      Journal Avian Dis. 2011 Mar;55(1):65-9.
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Scientific NameAvian orthoreovirus [TAX:38170]
LineageViruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Orthoreovirus
RefSeq
Avian orthoreovirus segment L1, complete genome.
Avian orthoreovirus segment L2, complete genome.
Avian orthoreovirus segment L3, complete genome.
Avian orthoreovirus segment M1, complete genome.
Avian orthoreovirus segment M2, complete genome.
Avian orthoreovirus segment M3, complete genome.
Avian orthoreovirus segment S1, complete genome.
Avian orthoreovirus segment S2, complete genome.
Avian orthoreovirus segment S3, complete genome.
Avian orthoreovirus segment S4, complete genome.
Evidence Literature
   Reference PMID: 21116842
      Authors Bányai K, Dandár E, Dorsey KM, Mató T, Palya V
      Title The genomic constellation of a novel avian orthoreovirus strain associated with runting-stunting syndrome in broilers.
      Journal Virus Genes. 2011 Feb;42(1):82-9.
   Comment Culture cell line: SPF chicken embryos, chicken liver cells
Culture cell line: SPF chicken embryos,chicken liver cell line
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Scientific Nameavian paramyxovirus 1 [TAX:2560319]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus javaense
RefSeq
Newcastle disease virus isolate JSD0812, complete genome.
Evidence Literature
   Reference PMID: 26634760
      Authors Liu M, Shen X, Cheng X, Li J, Dai Y
      Title Characterization and Sequencing of a Genotype VIId Newcastle Disease Virus Isolated from Laying Ducks in Jiangsu, China.
      Journal Genome Announc. 2015 Dec 3;3(6).
Isolation and preliminary identification of a virulent Newcastle disease virus isolate of duck origin M Liu, YY Wei, YB Dai, X Cheng, S Zhou… - Chin J Anim Infect …, 2010 - en.cnki.com.cn
   Comment Laboratory host: Gallus gallus
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Scientific Nameavian paramyxovirus 10 [TAX:862945]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus falklandense
RefSeq
Avian paramyxovirus penguin/Falkland Islands/324/2007, complete genome.
Evidence Literature
   Reference PMID: 20702635
      Authors Miller PJ, Afonso CL, Spackman E, Scott MA, Pedersen JC, Senne DA, Brown JD, Fuller CM, Uhart MM, Karesh WB, Brown IH, Alexander DJ, Swayne DE
      Title Evidence for a new avian paramyxovirus serotype 10 detected in rockhopper penguins from the Falkland Islands.
      Journal J Virol. 2010 Nov;84(21):11496-504.
   Comment Culture cell line: SPF ECE,vero cells, DF1 cells
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Scientific Nameavian paramyxovirus 11 [TAX:2560310]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus galliense
RefSeq
Avian paramyxovirus 11 isolate common_snipe/France/100212/2010, complete genome.
Evidence Literature
   Reference PMID: 22733876
      Authors Briand FX, Henry A, Massin P, Jestin V
      Title Complete genome sequence of a novel avian paramyxovirus.
      Journal J Virol. 2012 Jul;86(14):7710.
   Comment Culture cell line: embryonated specific-pathogen-free chicken eggs
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Scientific Nameavian paramyxovirus 12 [TAX:2560320]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus italiense
RefSeq
Avian paramyxovirus 12 isolate Wigeon/Italy/3920_1/2005, complete genome.
Evidence Literature
   Reference PMID: 23708253
      Authors Terregino C, Aldous EW, Heidari A, Fuller CM, De Nardi R, Manvell RJ, Beato MS, Shell WM, Monne I, Brown IH, Alexander DJ, Capua I
      Title Antigenic and genetic analyses of isolate APMV/wigeon/Italy/3920-1/2005 indicate that it represents a new avian paramyxovirus (APMV-12).
      Journal Arch Virol. 2013 Nov;158(11):2233-43.
   Comment Laboratory host: chicken
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Scientific Nameavian paramyxovirus 13 [TAX:2560321]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus japanense
RefSeq
Avian paramyxovirus goose/Shimane/67/2000 viral cRNA, complete genome.
Evidence Literature
   Reference PMID: 25866408
      Authors Yamamoto E, Ito H, Tomioka Y, Ito T
      Title Characterization of novel avian paramyxovirus strain APMV/Shimane67 isolated from migratory wild geese in Japan.
      Journal J Vet Med Sci. 2015 Sep;77(9):1079-85.
   Comment Culture cell line: DF-1, MDCK, MDBK, BHK, Vero, 293 cells
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Scientific Nameavian paramyxovirus 15 [TAX:1983777]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus peixense; Avian metaavulavirus 15
RefSeq
Avian paramyxovirus 15 isolate APMV-15/calidris_fuscicollis/Brazil/RS-1177/2012, partial genome.
Evidence Literature
   Reference PMID: 28486490
      Authors Thomazelli LM, de Araújo J, Fabrizio T, Walker D, Reischak D, Ometto T, Barbosa CM, Petry MV, Webby RJ, Durigon EL
      Title Novel avian paramyxovirus (APMV-15) isolated from a migratory bird in South America.
      Journal PLoS One. 2017;12(5):e0177214.
   Comment Culture cell line: embryonating chicken eggs
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Scientific Nameavian paramyxovirus 16 [TAX:2560322]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus upoense
RefSeq
Avian paramyxovirus UPO216 isolate APMV-15/WB/Kr/UPO216/2014, complete genome.
Evidence Literature
   Reference PMID: 28529504
      Authors Lee HJ, Kim JY, Lee YJ, Lee EK, Song BM, Lee HS, Choi KS
      Title A Novel Avian Paramyxovirus (Putative Serotype 15) Isolated from Wild Birds.
      Journal Front Microbiol. 2017;8:786.
   Comment Culture cell line: embryonated chicken eggs
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Scientific Nameavian paramyxovirus 2 [TAX:2560313]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus yucaipaense
RefSeq
Avian paramyxovirus 2 strain APMV-2/Chicken/California/Yucaipa/56, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 18603323
      Authors Subbiah M, Xiao S, Collins PL, Samal SK
      Title Complete sequence of the genome of avian paramyxovirus type 2 (strain Yucaipa) and comparison with other paramyxoviruses.
      Journal Virus Res. 2008 Oct;137(1):40-8.
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Scientific Nameavian paramyxovirus 6 [TAX:2560316]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus hongkongense
RefSeq
Avian paramyxovirus 6 strain APMV-6/Goose/FarEast/4440/2003, complete genome.
Evidence Literature
   Reference PMID: 20206652
      Authors Xiao S, Subbiah M, Kumar S, De Nardi R, Terregino C, Collins PL, Samal SK
      Title Complete genome sequences of avian paramyxovirus serotype 6 prototype strain Hong Kong and a recent novel strain from Italy: evidence for the existence of subgroups within the serotype.
      Journal Virus Res. 2010 Jun;150(1-2):61-72.
   Comment Culture cell line: embryonated chicken eggs
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Scientific Nameavian paramyxovirus 8 [TAX:2560318]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus delawarense
RefSeq
Avian paramyxovirus 8 strain goose/Delaware/1053/76, complete genome.
Evidence Literature
   Reference PMID: 19341613
      Authors Paldurai A, Subbiah M, Kumar S, Collins PL, Samal SK
      Title Complete genome sequences of avian paramyxovirus type 8 strains goose/Delaware/1053/76 and pintail/Wakuya/20/78.
      Journal Virus Res. 2009 Jun;142(1-2):144-53.
   Comment Culture cell line: embryonated specific pathogen free chicken eggs, chicken embryo kidney cells, 293T cells
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Scientific Nameavian paramyxovirus 9 [TAX:2560326]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus newyorkense
RefSeq
Avian paramyxovirus 9 strain duck/New York/22/1978, complete genome.
Evidence Literature
   Reference PMID: 19185593
      Authors Samuel AS, Kumar S, Madhuri S, Collins PL, Samal SK
      Title Complete sequence of the genome of avian paramyxovirus type 9 and comparison with other paramyxoviruses.
      Journal Virus Res. 2009 Jun;142(1-2):10-8.
   Comment Culture cell line: SPF embryonated chicken eggs, CEK, DF-1, Vero, BHK21 cells
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Scientific NameAvian retrovirus IC10 [TAX:11874]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; unclassified Alpharetrovirus
GenBank
X13744  
Avian Retrovirus IC10 proviral genome.
Evidence Literature
   Reference PMID: 2537952
      Authors Eychène A, Marx M, Dezélée P, Calothy G
      Title Complete nucleotide sequence of IC10, a retrovirus containing the Rmil oncogene transduced in chicken neuroretina cells infected with avian retrovirus RAV-1.
      Journal Nucleic Acids Res. 1989 Feb 11;17(3):1250.
   Comment Culture cell line: chicken neuroretina cells
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Scientific NameAvian sarcoma virus CT10 [TAX:11878]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus
RefSeq
Avian sarcoma virus CT10 genomic sequence.
Evidence Literature
   Reference PMID: 2450282
      Authors Mayer BJ, Hamaguchi M, Hanafusa H
      Title A novel viral oncogene with structural similarity to phospholipase C.
      Journal Nature. 1988 Mar 17;332(6161):272-5.
   Comment Culture cell line: CEF, QT6 cells
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Scientific Nameavihepatovirus A1 [TAX:1006061]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avihepatovirus; Avihepatovirus A
RefSeq
Duck hepatitis A virus 1 strain R85952, complete genome.
Evidence Literature
   Reference PMID: 17030865
      Authors Kim MC, Kwon YK, Joh SJ, Lindberg AM, Kwon JH, Kim JH, Kim SJ
      Title Molecular analysis of duck hepatitis virus type 1 reveals a novel lineage close to the genus Parechovirus in the family Picornaviridae.
      Journal J Gen Virol. 2006 Nov;87(Pt 11):3307-16.
   Comment laboratory host: Labo9-day-old embryonated chicken eggs
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Scientific Nameavisivirus B1 [TAX:1534545]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avisivirus; Avisivirus B
RefSeq
Chicken picornavirus 2 isolate 44C, complete genome.
Evidence RefSeq
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Scientific Nameavisivirus C1 [TAX:1534546]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avisivirus; Avisivirus C
RefSeq
Chicken picornavirus 3 isolate 45C, complete genome.
Evidence RefSeq
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Scientific NameAvisivirus Pf-CHK1/AsV [TAX:1766559]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avisivirus; unclassified Avisivirus
RefSeq
Avisivirus Pf-CHK1/AsV, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 26707271
      Authors Boros Á, Pankovics P, Adonyi Á, Fenyvesi H, Day JM, Phan TG, Delwart E, Reuter G
      Title A diarrheic chicken simultaneously co-infected with multiple picornaviruses: Complete genome analysis of avian picornaviruses representing up to six genera.
      Journal Virology. 2016 Feb;489:63-74.
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Scientific NameBudgerigar fledgling disease virus - 1 [TAX:133789]
LineageViruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Gammapolyomavirus; Gammapolyomavirus avis
RefSeq
Budgerigar fledgling disease virus - 1, complete genome.
Evidence Literature
   Reference PMID: 2838972
      Authors Rott O, Kröger M, Müller H, Hobom G
      Title The genome of budgerigar fledgling disease virus, an avian polyomavirus.
      Journal Virology. 1988 Jul;165(1):74-86.
   Comment chicken
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameCalicivirus chicken/V0021/Bayern/2004 [TAX:889389]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; unclassified Caliciviridae
RefSeq
Calicivirus chicken/V0021/Bayern/2004, complete genome.
Evidence RefSeq
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken anemia virus [TAX:12618]
LineageViruses; Anelloviridae; Gyrovirus; Gyrovirus chickenanemia
RefSeq
Chicken anemia virus, complete genome.
Evidence UniProt
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken associated cyclovirus 2 [TAX:2109365]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus naahoohai
RefSeq
Chicken associated cyclovirus 2 strain RS/BR/2015/4R, complete genome.
Evidence RefSeq
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken associated huchismacovirus 1 [TAX:2169932]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus; Huchismacovirus chicas1
RefSeq
Chicken associated huchismacovirus 1, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 28100302
      Authors Lima DA, Cibulski SP, Finkler F, Teixeira TF, Varela APM, Cerva C, Loiko MR, Scheffer CM, Dos Santos HF, Mayer FQ, Roehe PM
      Title Faecal virome of healthy chickens reveals a large diversity of the eukaryote viral community, including novel circular ssDNA viruses.
      Journal J Gen Virol. 2017 Apr;98(4):690-703.
DBLINKS
KEGG BRITE:  

Scientific NameChicken associated huchismacovirus 2 [TAX:2169933]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus; Huchismacovirus chicas2
RefSeq
Chicken associated huchismacovirus 2, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 28100302
      Authors Lima DA, Cibulski SP, Finkler F, Teixeira TF, Varela APM, Cerva C, Loiko MR, Scheffer CM, Dos Santos HF, Mayer FQ, Roehe PM
      Title Faecal virome of healthy chickens reveals a large diversity of the eukaryote viral community, including novel circular ssDNA viruses.
      Journal J Gen Virol. 2017 Apr;98(4):690-703.
DBLINKS
KEGG BRITE:  

Scientific NameChicken associated smacovirus [TAX:1932006]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus; unclassified Huchismacovirus
RefSeq
Chicken associated smacovirus strain RS/BR/2015/4, complete genome.
Chicken associated smacovirus strain RS/BR/2015/1, complete genome.
Evidence RefSeq
DBLINKS
KEGG BRITE:  

Scientific NameChicken astrovirus [TAX:336959]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Stellavirales; Astroviridae; Avastrovirus; unclassified Avastrovirus
RefSeq
Chicken astrovirus, complete genome.
Evidence Literature
   Reference PMID: 10954549
      Authors Imada T, Yamaguchi S, Mase M, Tsukamoto K, Kubo M, Morooka A
      Title Avian nephritis virus (ANV) as a new member of the family Astroviridae and construction of infectious ANV cDNA.
      Journal J Virol. 2000 Sep;74(18):8487-93.
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken calicivirus [TAX:1172196]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Bavovirus; Bavaria virus
RefSeq
Chicken calicivirus strain RS/BR/2015, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 28100302
      Authors Lima DA, Cibulski SP, Finkler F, Teixeira TF, Varela APM, Cerva C, Loiko MR, Scheffer CM, Dos Santos HF, Mayer FQ, Roehe PM
      Title Faecal virome of healthy chickens reveals a large diversity of the eukaryote viral community, including novel circular ssDNA viruses.
      Journal J Gen Virol. 2017 Apr;98(4):690-703.
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken chapparvovirus 2 [TAX:2109367]
LineageViruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Hamaparvovirinae; Chaphamaparvovirus; Chaphamaparvovirus galliform2
RefSeq
Chicken chapparvovirus 2 strain RS/BR/15/2S NS1 (QKJ70_gp1) and capsid protein (QKJ70_gp2) genes, complete cds.
Evidence RefSeq
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific Namechicken chapparvovirus HK [TAX:2849623]
LineageViruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Hamaparvovirinae; Chaphamaparvovirus; Chaphamaparvovirus galliform3
RefSeq
Chicken chapparvovirus HK isolate ParvoQ45/2013 NS1 (NS1) gene, complete cds.
Evidence RefSeq
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken genomovirus mg4_1165 [TAX:2720941]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga5
RefSeq
Chicken genomovirus mg4_1165, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken genomovirus mg4_1173 [TAX:2720942]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga3
RefSeq
Chicken genomovirus mg4_1173, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken genomovirus mg4_1218 [TAX:2720945]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus galga3
RefSeq
Chicken genomovirus mg4_1218, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken genomovirus mg4_1247 [TAX:2720946]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga1
RefSeq
Chicken genomovirus mg4_1247, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken genomovirus mg7_73 [TAX:2720949]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus galga1
RefSeq
Chicken genomovirus mg7_73, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken genomovirus mg7_78 [TAX:2720951]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga4
RefSeq
Chicken genomovirus mg7_78, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken genomovirus mg8_401 [TAX:2720952]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus galga2
RefSeq
Chicken genomovirus mg8_401, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken microvirus mg4_115 [TAX:2720914]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg4_115, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg4_164 [TAX:2720915]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg4_164, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg4_207 [TAX:2720916]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg4_207, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg4_76 [TAX:2720917]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg4_76, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg5_146 [TAX:2720918]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg5_146, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg6_154 [TAX:2720919]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg6_154, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg6_218 [TAX:2720920]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg6_218, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg7_1 [TAX:2720921]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg7_1, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg7_10 [TAX:2720922]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg7_10, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg7_14 [TAX:2720923]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg7_14, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg7_16 [TAX:2720924]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg7_16, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg7_19 [TAX:2720925]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg7_19, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg7_20 [TAX:2720926]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg7_20, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg7_25 [TAX:2720927]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg7_25, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg7_6 [TAX:2720928]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg7_6, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg7_7 [TAX:2720929]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg7_7, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg7_8 [TAX:2720930]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg7_8, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg8_102 [TAX:2720931]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg8_102, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg8_109 [TAX:2720932]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg8_109, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg8_41 [TAX:2720933]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg8_41, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg8_45 [TAX:2720934]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg8_45, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg8_48 [TAX:2720935]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg8_48, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken microvirus mg8_95 [TAX:2720936]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank
Chicken microvirus mg8_95, complete genome.
Evidence GenBank
DBLINKS
ViralZone:  

Scientific NameChicken orivirus 1 [TAX:1565990]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Orivirus; Orivirus A
RefSeq
Chicken orivirus 1 strain chicken/Pf-CHK1/2013/HUN, complete genome.
Evidence RefSeq
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken parvovirus [TAX:1136878]
LineageViruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Aveparvovirus; Aveparvovirus galliform1
GenBank
Chicken parvovirus isolate ADL120686, complete genome.
Evidence GenBank
Evidence Literature
   Reference PMID: 25510852
      Authors Koo BS, Lee HR, Jeon EO, Han MS, Min KC, Lee SB, Bae YJ, Cho SH, Mo JS, Kwon HM, Sung HW, Kim JN, Mo IP
      Title Genetic characterization of three novel chicken parvovirus strains based on analysis of their coding sequences.
      Journal Avian Pathol. 2015;44(1):28-34.
DBLINKS
ViralZone:  

Scientific NameChicken parvovirus ABU-P1 [TAX:717641]
LineageViruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Aveparvovirus; Aveparvovirus galliform1
RefSeq
Chicken parvovirus ABU-P1, complete genome.
Evidence UniProt
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken picobirnavirus [TAX:1930304]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Picobirnaviridae; Picobirnavirus; unclassified Picobirnavirus
RefSeq
Chicken picobirnavirus strain PBV/CHK/M3841/HUN/2011 segment RNA1, complete sequence.
Chicken picobirnavirus strain PBV/CHK/M3841/HUN/2011 segment RNA2, complete sequence.
Evidence RefSeq
Evidence Literature
   Reference PMID: 30191372
      Authors Pankovics P, Boros Á, Nemes C, Kapusinszky B, Delwart E, Reuter G
      Title Molecular characterization of a novel picobirnavirus in a chicken.
      Journal Arch Virol. 2018 Dec;163(12):3455-3458.
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken picornavirus 1 [TAX:1534544]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; unclassified Picornaviridae
RefSeq
Chicken picornavirus 1 isolate 55C, complete genome.
Evidence RefSeq
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken picornavirus 4 [TAX:1534547]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; unclassified Picornaviridae
RefSeq
Chicken picornavirus 4 isolate 5C, complete genome.
Evidence RefSeq
DBLINKS
KEGG BRITE:  
ViralZone:  

Scientific NameChicken smacovirus mg4_881 [TAX:2720958]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas2
RefSeq
Chicken smacovirus mg4_881, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  

Scientific NameChicken smacovirus mg4_885 [TAX:2720959]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas4
RefSeq
Chicken smacovirus mg4_885, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  

Scientific NameChicken smacovirus mg4_964 [TAX:2720960]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas6
RefSeq
Chicken smacovirus mg4_964, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  

Scientific NameChicken smacovirus mg5_1081 [TAX:2720961]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas7
RefSeq
Chicken smacovirus mg5_1081, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  

Scientific NameChicken smacovirus mg5_1212 [TAX:2720962]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas3
RefSeq
Chicken smacovirus mg5_1212, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
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Scientific NameChicken smacovirus mg7_67 [TAX:2720966]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas5
RefSeq
Chicken smacovirus mg7_67, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  

Scientific NameChicken stool associated circular virus 1 [TAX:2109373]
LineageViruses; unclassified viruses
RefSeq
Chicken stool associated circular virus 1 strain RS/BR/2015/1R, complete genome.
Evidence RefSeq
DBLINKS
KEGG BRITE:  

Scientific NameChicken stool associated circular virus 2 [TAX:2109374]
LineageViruses; unclassified viruses
RefSeq
Chicken stool associated circular virus 2 strain RS/BR/2015/1R, complete genome.
Evidence RefSeq
DBLINKS
KEGG BRITE:  

Scientific NameChicken stool-associated circular virus [TAX:1930302]
LineageViruses; unclassified viruses
RefSeq
Chicken stool-associated circular virus strain RS/BR/2015, complete genome.
Evidence RefSeq
DBLINKS
KEGG BRITE:  

Scientific NameChicken stool-associated gemycircularvirus [TAX:1930298]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga2
RefSeq
Chicken stool-associated gemycircularvirus strain RS/BR/2015, complete genome.
Evidence RefSeq
DBLINKS
KEGG BRITE:  
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Scientific NameChicken virus mg5_2876 [TAX:2720907]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Rivendellvirales; Naryaviridae; Nauglamirvirus; Nauglamirvirus anduin
RefSeq
Chicken virus mg5_2876, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 34946202
      Authors Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
      Title Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
      Journal Microorganisms. 2021 Dec 16;9(12).
DBLINKS
KEGG BRITE:  
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Scientific NameCircovirus NGchicken38/NGA/2009 [TAX:942030]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; Circovirus pigeon; Pigeon circovirus
GenBank
Circovirus NGchicken38/NGA/2009 isolate NGchicken38, complete genome.
Evidence GenBank
DBLINKS
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Scientific NameCyclovirus NGchicken15/NGA/2009 [TAX:942037]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus adie; Chicken associated cyclovirus 1
RefSeq
Cyclovirus NGchicken15/NGA/2009, complete genome.
Evidence RefSeq
DBLINKS
KEGG BRITE:  
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Scientific NameCyclovirus NGchicken8/NGA/2009 [TAX:942036]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus adie; Chicken associated cyclovirus 1
RefSeq
Cyclovirus NGchicken8/NGA/2009 isolate NGchicken8, complete genome.
Evidence RefSeq
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Scientific NameDuck atadenovirus A [TAX:130328]
LineageViruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Atadenovirus
RefSeq
Duck adenovirus A, complete genome.
Evidence Literature
   Reference PMID: 9375018
      Authors Hess M, Blöcker H, Brandt P
      Title The complete nucleotide sequence of the egg drop syndrome virus: an intermediate between mastadenoviruses and aviadenoviruses.
      Journal Virology. 1997 Nov 10;238(1):145-56.
   Comment chickens
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Scientific Nameenterovirus D70 [TAX:12090]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Enterovirus; Enterovirus D
GenBank
D00820  
Human enterovirus 70 genomic RNA, complete genome, strain: J670/71.
DISEASE
H01421  
Acute hemorrhagic conjunctivitis
Evidence Literature
   Reference PMID: 2172447
      Authors Ryan MD, Jenkins O, Hughes PJ, Brown A, Knowles NJ, Booth D, Minor PD, Almond JW
      Title The complete nucleotide sequence of enterovirus type 70: relationships with other members of the picornaviridae.
      Journal J Gen Virol. 1990 Oct;71 ( Pt 10):2291-9.
   Comment Culture cell line: HEp-2c cells
DBLINKS
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Scientific NameFaeces associated gemycircularvirus 17 [TAX:1843737]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus chicas2; Chicken associated gemycircularvirus 2
RefSeq
Faeces associated gemycircularvirus 17 isolate 27_Fec16497_chicken, complete sequence.
Evidence RefSeq
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Scientific NameFaeces associated gemycircularvirus 20 [TAX:1843740]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus chicas1; Chicken associated gemycircularvirus 1
RefSeq
Faeces associated gemycircularvirus 20 isolate 27_Fec79971_chicken, complete sequence.
Evidence RefSeq
DBLINKS
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Scientific NameFlamingopox virus FGPVKD09 [TAX:2059380]
LineageViruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Avipoxvirus; unclassified Avipoxvirus
RefSeq
Flamingopox virus FGPVKD09, complete genome.
Evidence Literature
   Reference PMID: 29207949
      Authors Carulei O, Douglass N, Williamson AL
      Title Comparative analysis of avian poxvirus genomes, including a novel poxvirus from lesser flamingos (Phoenicopterus minor), highlights the lack of conservation of the central region.
      Journal BMC Genomics. 2017 Dec 6;18(1):947.
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Scientific NameFowl adenovirus 9 [TAX:172864]
LineageViruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Fowl aviadenovirus D
GenBank
Fowl adenovirus 9, complete genome.
Evidence Literature
   Reference PMID: 12441071
      Authors Ojkic D, Krell PJ, Nagy E
      Title Unique features of fowl adenovirus 9 gene transcription.
      Journal Virology. 2002 Oct 25;302(2):274-85.
   Comment Culture cell line: CH-SAH cells
DBLINKS
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Scientific NameFowl aviadenovirus 1 [TAX:10553]
LineageViruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Fowl aviadenovirus A
GenBank
U46933  
Avian adenovirus CELO, complete genome.
Evidence Literature
   Reference PMID: 8627769
      Authors Chiocca S, Kurzbauer R, Schaffner G, Baker A, Mautner V, Cotten M
      Title The complete DNA sequence and genomic organization of the avian adenovirus CELO.
      Journal J Virol. 1996 May;70(5):2939-49.
   Comment Culture cell line: chicken embryos
DBLINKS
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Scientific NameFowl aviadenovirus 5 [TAX:172861]
LineageViruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Fowl aviadenovirus B
RefSeq
Fowl adenovirus 5 strain 340, complete genome.
Evidence RefSeq
DBLINKS
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Scientific NameFowl aviadenovirus 6 [TAX:172862]
LineageViruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Fowl aviadenovirus E
RefSeq
Fowl adenovirus 6 strain CR119, complete genome.
Evidence RefSeq
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Scientific NameFowl aviadenovirus A [TAX:190061]
LineageViruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus
RefSeq
Fowl adenovirus A, complete genome.
Fowl adenovirus A, complete genome.
Evidence Literature
   Reference PMID: 8627769
      Authors Chiocca S, Kurzbauer R, Schaffner G, Baker A, Mautner V, Cotten M
      Title The complete DNA sequence and genomic organization of the avian adenovirus CELO.
      Journal J Virol. 1996 May;70(5):2939-49.
   Comment chicken embryo
Culture cell line:chicken embryo
DBLINKS
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ICTV:  
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Scientific NameFowl aviadenovirus C [TAX:190063]
LineageViruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus
RefSeq
Fowl adenovirus C, complete genome.
Fowl adenovirus C complete genome, isolate KR5.
Evidence RefSeq
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KEGG BRITE:  
ICTV:  
ViralZone:  

Scientific NameFowl aviadenovirus D [TAX:190064]
LineageViruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus
RefSeq
Fowl adenovirus D, complete genome.
Fowl adenovirus D, complete genome.
Evidence Literature
   Reference PMID: 12441071
      Authors Ojkic D, Krell PJ, Nagy E
      Title Unique features of fowl adenovirus 9 gene transcription.
      Journal Virology. 2002 Oct 25;302(2):274-85.
   Comment Culture cell line: CH-SAH cell
Culture cell line: CH-SAH cells
Evidence Literature
   Reference PMID: 9780058
      Authors Cao JX, Krell PJ, Nagy E
      Title Sequence and transcriptional analysis of terminal regions of the fowl adenovirus type 8 genome.
      Journal J Gen Virol. 1998 Oct;79 ( Pt 10):2507-16.
   Comment Culture cell line: CH-SAH cell
Culture cell line: CH-SAH cells
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ICTV:  
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Scientific NameFowl aviadenovirus E [TAX:190065]
LineageViruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus
RefSeq
Fowl adenovirus E, complete genome.
Evidence RefSeq
DBLINKS
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ICTV:  
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Scientific NameFowlpox virus [TAX:10261]
LineageViruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Avipoxvirus
RefSeq
Fowlpox virus, complete genome.
Evidence Literature
   Reference PMID: 10729156
      Authors Afonso CL, Tulman ER, Lu Z, Zsak L, Kutish GF, Rock DL
      Title The genome of fowlpox virus.
      Journal J Virol. 2000 Apr;74(8):3815-31.
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ICTV:  
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Scientific NameFujinami sarcoma virus [TAX:11885]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus
RefSeq
Fujinami sarcoma virus, complete genome.
Evidence UniProt
DBLINKS
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ICTV:  
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Scientific NameGallid alphaherpesvirus 1 [TAX:10386]
LineageViruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Iltovirus; Iltovirus gallidalpha1
RefSeq
Gallid herpesvirus 1, complete genome.
Gallid herpesvirus 1 strain SA2, complete genome.
Evidence RefSeq
Evidence UniProt
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Scientific NameGallid alphaherpesvirus 2 [TAX:10390]
LineageViruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha2
RefSeq
Gallid herpesvirus 2, complete genome.
Evidence RefSeq
Evidence UniProt
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Scientific NameGallid alphaherpesvirus 3 [TAX:35250]
LineageViruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha3
RefSeq
Gallid herpesvirus 3, complete genome.
Gallid herpesvirus 3 strain SB-1, complete genome.
Evidence RefSeq
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Scientific NameGallid herpesvirus 2 strain 814 [TAX:1123959]
LineageViruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha2; Gallid alphaherpesvirus 2
GenBank
Gallid herpesvirus 2 strain 814, complete genome.
Evidence GenBank
Evidence Literature
   Reference PMID: 21984218
      Authors Zhang F, Liu CJ, Zhang YP, Li ZJ, Liu AL, Yan FH, Cong F, Cheng Y
      Title Comparative full-length sequence analysis of Marek's disease virus vaccine strain 814.
      Journal Arch Virol. 2012 Jan;157(1):177-83.
   Comment Culture cell line: chicken embryo fibroblasts
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Scientific Namegallivirus A1 [TAX:2764087]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Gallivirus; Gallivirus A
RefSeq
Gallivirus A1 isolate 518C, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 24906980
      Authors Lau SKP, Woo PCY, Yip CCY, Li KSM, Fan RYY, Bai R, Huang Y, Chan KH, Yuen KY
      Title Chickens host diverse picornaviruses originated from potential interspecies transmission with recombination.
      Journal J Gen Virol. 2014 Sep;95(Pt 9):1929-1944.
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Scientific NameGallivirus Pf-CHK1/GV [TAX:1766557]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Gallivirus; unclassified Gallivirus
RefSeq
Gallivirus Pf-CHK1/GV, complete genome.
Evidence RefSeq
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Scientific NameGallus gallus enteric parvovirus [TAX:1633569]
LineageViruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Aveparvovirus; Aveparvovirus galliform1
GenBank
Gallus gallus enteric parvovirus isolate ChPV 367, complete genome.
Evidence GenBank
Evidence Literature
   Reference PMID: 26292551
      Authors Zsak L, Cha RM, Li F, Day JM
      Title Host Specificity and Phylogenetic Relationships of Chicken and Turkey Parvoviruses.
      Journal Avian Dis. 2015 Mar;59(1):157-61.
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Scientific NameGoose paramyxovirus SF02 [TAX:204987]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; unclassified Avulavirinae
RefSeq
Goose paramyxovirus SF02, complete genome.
Evidence Literature
   Reference PMID: 15744558
      Authors Zou J, Shan S, Yao N, Gong Z
      Title Complete genome sequence and biological characterizations of a novel goose paramyxovirus-SF02 isolated in China.
      Journal Virus Genes. 2005 Jan;30(1):13-21.
   Comment Chicken
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Scientific NameInfectious bronchitis virus [TAX:11120]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Avian coronavirus
RefSeq
Avian infectious bronchitis virus, complete genome.
Infectious bronchitis virus isolate Ind-TN92-03, complete genome.
Evidence RefSeq
Evidence UniProt
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Scientific NameInfectious bronchitis virus ITA/90254/2005 [TAX:658929]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Avian coronavirus; Infectious bronchitis virus
GenBank
Infectious bronchitis virus ITA/90254/2005, complete genome.
Evidence Literature
   Reference PMID: 19625463
      Authors Ducatez MF, Martin AM, Owoade AA, Olatoye IO, Alkali BR, Maikano I, Snoeck CJ, Sausy A, Cordioli P, Muller CP
      Title Characterization of a new genotype and serotype of infectious bronchitis virus in Western Africa.
      Journal J Gen Virol. 2009 Nov;90(Pt 11):2679-85.
DBLINKS
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Scientific NameInfectious bronchitis virus NGA/A116E7/2006 [TAX:658930]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Avian coronavirus; Infectious bronchitis virus
GenBank
Infectious bronchitis virus NGA/A116E7/2006, complete genome.
Evidence Literature
   Reference PMID: 19625463
      Authors Ducatez MF, Martin AM, Owoade AA, Olatoye IO, Alkali BR, Maikano I, Snoeck CJ, Sausy A, Cordioli P, Muller CP
      Title Characterization of a new genotype and serotype of infectious bronchitis virus in Western Africa.
      Journal J Gen Virol. 2009 Nov;90(Pt 11):2679-85.
DBLINKS
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Scientific NameInfectious bursal disease virus [TAX:10995]
LineageViruses; Riboviria; Orthornavirae; Birnaviridae; Avibirnavirus; Avibirnavirus gumboroense
RefSeq
Infectious bursal disease virus segment A, complete sequence.
Infectious bursal disease virus segment B, complete sequence.
Infectious bursal disease virus RNA for small ORF (P2).
Infectious bursal disease virus RNA for possible polymerase (P2).
Evidence RefSeq
Evidence UniProt
DBLINKS
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Scientific NameInfluenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) [TAX:183764]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus influenzae; Influenza A virus; H1N1 subtype; Influenza A virus (A/Puerto Rico/8/1934(H1N1))
GenBank
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 1, complete sequence.
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 2, complete sequence.
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 3, complete sequence.
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 4, complete sequence.
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 5, complete sequence.
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 6, complete sequence.
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 7, complete sequence.
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 8, complete sequence.
Evidence Literature
   Reference PMID: 11779399
      Authors Schickli JH, Flandorfer A, Nakaya T, Martinez-Sobrido L, García-Sastre A, Palese P
      Title Plasmid-only rescue of influenza A virus vaccine candidates.
      Journal Philos Trans R Soc Lond B Biol Sci. 2001 Dec 29;356(1416):1965-73.
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Scientific NameMarek's disease virus serotype 2 MDV2 [TAX:36353]
LineageViruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha3; Gallid alphaherpesvirus 3
GenBank
Gallid herpesvirus 1 (serotype 2) DNA, UL region complete sequence.
Evidence Literature
   Reference PMID: 10458102
      Authors Kato K, Jang HK, Izumiya Y, Cai JS, Tsushima Y, Miyazawa T, Kai C, Mikami T
      Title Identification and sequence analysis of the Marek's disease virus serotype 2 homologous genes of the herpes simplex virus type 1 UL25, UL26 and UL26.5 genes.
      Journal J Vet Med Sci. 1999 Jul;61(7):787-93.
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Scientific Namemegrivirus C1 [TAX:1477515]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Megrivirus; Megrivirus C
RefSeq
Chicken megrivirus strain chicken/B21-CHV/2012/HUN, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 24672039
      Authors Boros Á, Pankovics P, Knowles NJ, Nemes C, Delwart E, Reuter G
      Title Comparative complete genome analysis of chicken and Turkey megriviruses (family picornaviridae): long 3' untranslated regions with a potential second open reading frame and evidence for possible recombination.
      Journal J Virol. 2014 Jun;88(11):6434-43.
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Scientific Namemegrivirus C2 [TAX:2847848]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Megrivirus; Megrivirus C
RefSeq
Megrivirus C2 isolate 27C, complete genome.
Evidence RefSeq
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Scientific NameMeleagrid alphaherpesvirus 1 [TAX:37108]
LineageViruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus meleagridalpha1
RefSeq
Meleagrid herpesvirus 1, complete genome.
Evidence UniProt
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Scientific NameMumps virus strain L-Zagreb [TAX:301186]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Rubulavirinae; Orthorubulavirus; Orthorubulavirus parotitidis; Mumps orthorubulavirus; Mumps virus genotype N
GenBank
Mumps virus strain L-Zagreb vaccine strain, complete genome.
Mumps virus strain L-Zagreb master seed, complete genome.
Evidence Literature
   Reference Beck, M., Welsz-Malecek, R., Mesko-Prejac, M., Radman, V., Juzbasic, M., Rajninger-Miholic, M., ... & Stainer, D. W. (1989). Mumps vaccine L-Zagreb, prepared in chick fibroblasts. I. Production and field trials. Journal of biological standardization, 17(1), 85-90.
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Scientific NameNewcastle disease virus B1 [TAX:139270]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus javaense; avian paramyxovirus 1
GenBank
Newcastle disease virus B1, complete genome.
Evidence Literature
   Reference PMID: 1466491
      Authors Ahmad J, Sharma JM
      Title Evaluation of a modified-live virus vaccine administered in ovo to protect chickens against Newcastle disease.
      Journal Am J Vet Res. 1992 Nov;53(11):1999-2004.
DBLINKS
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Scientific NameOrivirus A [TAX:2170052]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Orivirus
GenBank
Orivirus A strain chicken/Pf-CHK1/2013/HUN, complete genome.
Evidence GenBank
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ICTV:  
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Scientific NameParrot bornavirus 1 [TAX:1548714]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Bornaviridae; Orthobornavirus; Orthobornavirus alphapsittaciforme
RefSeq
Parrot bornavirus 1 strain M25 N protein (N), X protein (X), P protein (P), matrix protein (M), glycoprotein (G), and viral polymerase (L) genes, complete cds.
Evidence Literature
   Reference PMID: 27100150
      Authors Piepenbring AK, Enderlein D, Herzog S, Al-Ibadi B, Heffels-Redmann U, Heckmann J, Lange-Herbst H, Herden C, Lierz M
      Title Parrot Bornavirus (PaBV)-2 isolate causes different disease patterns in cockatiels than PaBV-4.
      Journal Avian Pathol. 2016;45(2):156-68.
   Comment Culture cell line: CEC-32
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Scientific NameParrot bornavirus 2 [TAX:1548715]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Bornaviridae; Orthobornavirus; Orthobornavirus alphapsittaciforme
RefSeq
Parrot bornavirus 2, complete genome.
Evidence Literature
   Reference PMID: 27100150
      Authors Piepenbring AK, Enderlein D, Herzog S, Al-Ibadi B, Heffels-Redmann U, Heckmann J, Lange-Herbst H, Herden C, Lierz M
      Title Parrot Bornavirus (PaBV)-2 isolate causes different disease patterns in cockatiels than PaBV-4.
      Journal Avian Pathol. 2016;45(2):156-68.
   Comment Culture cell line: CEC-32
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Scientific NameParrot bornavirus 4 [TAX:1548718]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Bornaviridae; Orthobornavirus; Orthobornavirus alphapsittaciforme
RefSeq
Parrot bornavirus 4, complete genome.
Evidence Literature
   Reference PMID: 27100150
      Authors Piepenbring AK, Enderlein D, Herzog S, Al-Ibadi B, Heffels-Redmann U, Heckmann J, Lange-Herbst H, Herden C, Lierz M
      Title Parrot Bornavirus (PaBV)-2 isolate causes different disease patterns in cockatiels than PaBV-4.
      Journal Avian Pathol. 2016;45(2):156-68.
   Comment Culture cell line: CEC-32
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Scientific NamePaslahepevirus balayani [TAX:1678143]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Hepelivirales; Hepeviridae; Orthohepevirinae; Paslahepevirus
RefSeq
Paslahepevirus balayani nonstructural protein and structural viral protein genes, complete cds.
Paslahepevirus balayani isolate AlgSwe2012, partial genome.
Paslahepevirus balayani isolate little egret/kocsag02/2014/HUN, complete genome.
DISEASE
H00415  
Hepatitis E; Hepatitis E virus (HEV) infection
Evidence UniProt
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Scientific NamePixuna virus [TAX:60876]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus
RefSeq
Pixuna virus strain Pixuna BeAr 35645, complete genome.
Evidence Literature
   Reference PMID: 962587
      Authors Jahrling PB, Navarro E, Scherer WF
      Title Interferon induction and sensitivity as correlates to virulence of Venezuelan encephalitis viruses for hamsters.
      Journal Arch Virol. 1976;51(1-2):23-35.
   Comment Culture cell line: baby hamster kidney-21 cells, chicken-embryonic cell(CEC cells)
Evidence Literature
   Reference PMID: 9886206
      Authors Kinney RM, Pfeffer M, Tsuchiya KR, Chang GJ, Roehrig JT
      Title Nucleotide sequences of the 26S mRNAs of the viruses defining the Venezuelan equine encephalitis antigenic complex.
      Journal Am J Trop Med Hyg. 1998 Dec;59(6):952-64.
   Comment Culture cell line: baby hamster kidney-21 cells, chicken-embryonic cell(CEC cells)
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Scientific NameReticuloendotheliosis virus [TAX:11636]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus
RefSeq
Reticuloendotheliosis virus strain HA9901 from China, complete genome.
Evidence RefSeq
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Scientific NameRotavirus D chicken/05V0049/DEU/2005 [TAX:884200]
LineageViruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus D
RefSeq
Rotavirus D chicken/05V0049/DEU/2005 segment 1, complete genome.
Rotavirus D chicken/05V0049/DEU/2005 segment 2, complete genome.
Rotavirus D chicken/05V0049/DEU/2005 segment 3, complete genome.
Rotavirus D chicken/05V0049/DEU/2005 segment 4, complete genome.
Rotavirus D chicken/05V0049/DEU/2005 segment 5, complete genome.
Rotavirus D chicken/05V0049/DEU/2005 segment 6, complete genome.
Rotavirus D chicken/05V0049/DEU/2005 segment 7, complete genome.
Rotavirus D chicken/05V0049/DEU/2005 segment 8, complete genome.
Rotavirus D chicken/05V0049/DEU/2005 segment 9, complete genome.
Rotavirus D chicken/05V0049/DEU/2005 segment 10, complete genome.
Rotavirus D chicken/05V0049/DEU/2005 segment 11, complete genome.
Evidence RefSeq
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Scientific NameRotavirus F chicken/03V0568/DEU/2003 [TAX:994994]
LineageViruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus F
RefSeq
Rotavirus F chicken/03V0568/DEU/2003 segment 1, complete sequence.
Rotavirus F chicken/03V0568/DEU/2003 segment 2, complete sequence.
Rotavirus F chicken/03V0568/DEU/2003 segment 9, complete sequence.
Rotavirus F chicken/03V0568/DEU/2003 segment 8, complete sequence.
Rotavirus F chicken/03V0568/DEU/2003 segment 10, complete sequence.
Rotavirus F chicken/03V0568/DEU/2003 segment 4, complete sequence.
Rotavirus F chicken/03V0568/DEU/2003 segment 3, complete sequence.
Rotavirus F chicken/03V0568/DEU/2003 segment 5, complete sequence.
Rotavirus F chicken/03V0568/DEU/2003 segment 7, complete sequence.
Rotavirus F chicken/03V0568/DEU/2003 segment 11, complete sequence.
Rotavirus F chicken/03V0568/DEU/2003 segment 6, complete sequence.
Evidence RefSeq
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Scientific NameRotavirus G chicken/03V0567/DEU/2003 [TAX:994995]
LineageViruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus G
RefSeq
Rotavirus G chicken/03V0567/DEU/2003 segment 2, complete sequence.
Rotavirus G chicken/03V0567/DEU/2003 segment 3, complete sequence.
Rotavirus G chicken/03V0567/DEU/2003 segment 9, complete sequence.
Rotavirus G chicken/03V0567/DEU/2003 segment 5, complete sequence.
Rotavirus G chicken/03V0567/DEU/2003 segment 8, complete sequence.
Rotavirus G chicken/03V0567/DEU/2003 segment 7, complete sequence.
Rotavirus G chicken/03V0567/DEU/2003 segment 10, complete sequence.
Rotavirus G chicken/03V0567/DEU/2003 segment 11, complete sequence.
Rotavirus G chicken/03V0567/DEU/2003 segment 6, complete sequence.
Rotavirus G chicken/03V0567/DEU/2003 segment 4, complete sequence.
Rotavirus G chicken/03V0567/DEU/2003 segment 1, complete sequence.
Evidence RefSeq
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Scientific NameRous sarcoma virus [TAX:11886]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus
RefSeq
Rous sarcoma virus, complete genome.
Evidence UniProt
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Scientific NameSewage associated gemycircularvirus 3 [TAX:1843761]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus sewopo1; Sewage derived gemykibivirus 1
RefSeq
Sewage-associated gemycircularvirus-3 isolate BS4149, complete sequence.
Sewage associated gemycircularvirus 3 isolate 27_BS14149_chicken, complete sequence.
Evidence RefSeq
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Scientific NameShayang ascaridia galli virus 2 [TAX:1923460]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betanemrhavirus; Betanemrhavirus shayang
RefSeq
Shayang ascaridia galli virus 2 strain HC21241 hypothetical protein 1 (QKL27_gp1), hypothetical protein 2 (QKL27_gp2), hypothetical protein 3 (QKL27_gp3), hypothetical protein 4 (QKL27_gp4), putative glycoprotein (QKL27_gp5), and RNA-dependent RNA polymerase (QKL27_gp6) genes, complete cds.
Evidence RefSeq
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Scientific NameSicinivirus A [TAX:1755588]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Sicinivirus
RefSeq
Sicinivirus A strain UCC001, complete genome.
Evidence RefSeq
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Scientific Namesicinivirus A1 [TAX:2773315]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Sicinivirus; Sicinivirus A
RefSeq
Sicinivirus A1 isolate JSY, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 26461027
      Authors Zhou H, Zhu S, Quan R, Wang J, Wei L, Yang B, Xu F, Wang J, Chen F, Liu J
      Title Identification and Genome Characterization of the First Sicinivirus Isolate from Chickens in Mainland China by Using Viral Metagenomics.
      Journal PLoS One. 2015;10(10):e0139668.
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Scientific NameSitiawan virus [TAX:93923]
LineageViruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus tembusu; Tembusu virus
GenBank
Sitiawan virus, complete genome.
Evidence Literature
   Reference PMID: 22764316
      Authors Liu P, Lu H, Li S, Moureau G, Deng YQ, Wang Y, Zhang L, Jiang T, de Lamballerie X, Qin CF, Gould EA, Su J, Gao GF
      Title Genomic and antigenic characterization of the newly emerging Chinese duck egg-drop syndrome flavivirus: genomic comparison with Tembusu and Sitiawan viruses.
      Journal J Gen Virol. 2012 Oct;93(Pt 10):2158-70.
   Comment Source of isolation: Broiler chicken
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Scientific NameSnowshoe hare virus [TAX:11580]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus; Orthobunyavirus khatangaense
RefSeq
Snowshoe hare virus L polyprotein (L) gene, complete cds.
Snowshoe hare virus segment M G1/G2 membrane polyprotein gene, complete cds.
Snowshoe hare virus segment small, complete sequence.
Evidence UniProt
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Scientific NameSunguru virus [TAX:1491491]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Sunrhavirus; Sunrhavirus sunguru
RefSeq
Sunguru virus isolate Ug#41, complete genome.
Evidence RefSeq
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Scientific Nametremovirus A1 [TAX:2871093]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Heptrevirinae; Tremovirus; Tremovirus A
RefSeq
Avian encephalomyelitis virus, complete genome.
Evidence UniProt
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