Gallus gallus

Gallus gallus

Scientific Name	Gallus gallus [TAX:9031]
Lineage	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
DBLINKS	KEGG GENOME: T01006

Known viruses (148)

Scientific Name	Amphotropic murine leukemia virus [TAX:188539]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Gammaretrovirus murleu; Murine leukemia virus; unclassified Murine leukemia virus
GenBank	AF411814 Amphotropic murine leukemia virus strain 1313, complete genome.
Evidence	Literature
Reference	PMID: 17147829
Authors	Howard TM, Sheng Z, Wang M, Wu Y, Rasheed S
Title	Molecular and phylogenetic analyses of a new amphotropic murine leukemia virus (MuLV-1313).
Journal	Virol J. 2006 Dec 5;3:101.
Comment	Culture cell line: RD cells, chicken embryo cells, rat embryo cells
DBLINKS	ViralZone: genus, family

Scientific Name	Anaconda paramyxovirus [TAX:1529450]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Feraresvirinae; Ferlavirus; Ferlavirus reptilis
GenBank	KJ956407 Anaconda paramyxovirus isolate RF111111, complete genome.
Evidence	Literature
Reference	PMID: 25078906
Authors	Woo PC, Lau SK, Martelli P, Hui SW, Lau CC, Fan RY, Groff JM, Tam EW, Chan KH, Yuen KY
Title	Fatal systemic necrotizing infections associated with a novel paramyxovirus, anaconda paramyxovirus, in green anaconda juveniles.
Journal	J Clin Microbiol. 2014 Oct;52(10):3614-23.
Comment	Culture cell line: BHK21, HF, Calu-3, A549, Hep-2, Caco-2, HRT-18G, Huh-7, Hela, HEK, NT2, RD, SF268, His-1, MDCK, MDBK, RK13, 3T3, Dubca, LLC-MK2, Vero, VeroE6, CRFK, PK-15, RK3E, RMC,DF-1, C6/36 cells
DBLINKS	ViralZone: family, genus

Scientific Name	anativirus B1 [TAX:2870379]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Anativirus; Anativirus biphaco
RefSeq	NC_075992 Anativirus B1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_075992 ICTV: 202308674 ViralZone: family

Scientific Name	Avian adeno-associated virus ATCC VR-865 [TAX:219704]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Dependoparvovirus; Dependoparvovirus avian1
RefSeq	NC_004828 Avian adeno-associated virus ATCC VR-865, complete genome.
Evidence	Literature
Reference	PMID: 12768000
Authors	Bossis I, Chiorini JA
Title	Cloning of an avian adeno-associated virus (AAAV) and generation of recombinant AAAV particles.
Journal	J Virol. 2003 Jun;77(12):6799-810.
Comment	Culture cell line: CEF, DF-1, LMH, QNR, QT6, Chicken primary embryonic kidney cells, Chicken primary pituitary cells, COS cells
DBLINKS	KEGG BRITE: NC_004828 ICTV: 202304261 ViralZone: genus, family

Scientific Name	Avian adeno-associated virus strain DA-1 [TAX:281492]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Dependoparvovirus; Dependoparvovirus avian1
RefSeq	NC_006263 Avian adeno-associated virus strain DA-1, complete genome.
Evidence	Literature
Reference	PMID: 15351493
Authors	Estevez C, Villegas P
Title	Sequence analysis, viral rescue from infectious clones and generation of recombinant virions of the avian adeno-associated virus.
Journal	Virus Res. 2004 Oct;105(2):195-208.
Comment	Culture cell line: chicken eggs
DBLINKS	KEGG BRITE: NC_006263 ViralZone: genus, family

Scientific Name	Avian carcinoma virus [TAX:11958]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; unclassified Alpharetrovirus
RefSeq	NC_001402 Avian carcinoma virus, complete genome.
Evidence	Literature
Reference	PMID: 2986131
Authors	Hayflick J, Seeburg PH, Ohlsson R, Pfeifer-Ohlsson S, Watson D, Papas T, Duesberg PH
Title	Nucleotide sequence of two overlapping myc-related genes in avian carcinoma virus OK10 and their relation to the myc genes of other viruses and the cell.
Journal	Proc Natl Acad Sci U S A. 1985 May;82(9):2718-22.
Evidence	Literature
Reference	PMID: 3016301
Authors	Patschinsky T, Jansen HW, Blöcker H, Frank R, Bister K
Title	Structure and transforming function of transduced mutant alleles of the chicken c-myc gene.
Journal	J Virol. 1986 Aug;59(2):341-53.
DBLINKS	KEGG BRITE: NC_001402 ICTV: 202304982 ViralZone: genus, family

Scientific Name	Avian endogenous retrovirus EAV-HP [TAX:93465]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; unclassified Retroviridae; Avian retroviruses
RefSeq	NC_005947 Avian endogenous retrovirus EAV-HP, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 10627540
Authors	Sacco MA, Flannery DM, Howes K, Venugopal K
Title	Avian endogenous retrovirus EAV-HP shares regions of identity with avian leukosis virus subgroup J and the avian retrotransposon ART-CH.
Journal	J Virol. 2000 Feb;74(3):1296-306.
DBLINKS	KEGG BRITE: NC_005947 ViralZone: family

Scientific Name	Avian gyrovirus 2 [TAX:1002273]
Lineage	Viruses; Viruses incertae sedis; Anelloviridae; Gyrovirus; Gyrovirus galga1
RefSeq	NC_015396 Avian gyrovirus 2, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_015396 ICTV: 202309375 ViralZone: family, genus

Scientific Name	Avian hepatitis E virus [TAX:2907992]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Hepelivirales; Hepeviridae; Orthohepevirinae; Avihepevirus; Avihepevirus magniiecur
RefSeq	NC_023425 Avian hepatitis E virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_023425 ICTV: 202303666 ViralZone: family

Scientific Name	Avian infectious bronchitis virus partridge/GD/S14/2003 [TAX:284515]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Gammacoronavirus galli; Avian coronavirus; Infectious bronchitis virus
GenBank	AY646283 Avian infectious bronchitis virus partridge/GD/S14/2003, complete genome.
Evidence	Literature
Reference	PMID: 17037560
Authors	Britton P, Casais R, Hodgson T, Davis M, Cavanagh D
Title	Genes 3 and 5 of infectious bronchitis virus are accessory protein genes.
Journal	Adv Exp Med Biol. 2006;581:363-8.
Comment	Culture cell line: CK cells
DBLINKS	ViralZone: family, genus

Scientific Name	Avian leukemia virus [TAX:11946]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avileu; Avian leukosis virus
RefSeq	NC_015116 Avian leukemia virus isolate SCDY1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_015116 ViralZone: genus, family

Scientific Name	Avian leukosis virus [TAX:11864]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avileu
GenBank	DQ365814 Avian leukosis virus strain MQNCSU, complete genome. M37980 Avian leukosis virus, complete genome.
Evidence	Literature
Reference	Chesters,P.M., Howes,K. and Nair,V. , Isolation and Characterization of an Avian Leukosis Virus from Chicken Macropohage Cell Line MQ-NCSU, Unpublished
Comment	Culture cell line: Chicken Macropohage cells
Evidence	Literature
Reference	PMID: 1311072
Authors	Bieth E, Darlix JL
Title	Complete nucleotide sequence of a highly infectious avian leukosis virus.
Journal	Nucleic Acids Res. 1992 Jan 25;20(2):367.
	動物由来レトロウイルスの受容体〔ウイルス第 59 巻第 2 号，pp.223-242，2009〕
DBLINKS	ViralZone: genus, family

Scientific Name	Avian leukosis virus - RSA [TAX:363745]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avileu; Avian leukosis virus
RefSeq	NC_001408 Avian leukosis virus - RSA, complete genome.
Evidence	Literature
Reference	PMID: 1311072
Authors	Bieth E, Darlix JL
Title	Complete nucleotide sequence of a highly infectious avian leukosis virus.
Journal	Nucleic Acids Res. 1992 Jan 25;20(2):367.
Comment	Culture cell line: chick embryo fibroblasts
DBLINKS	KEGG BRITE: NC_001408 ICTV: 202304983 ViralZone: genus, family

Scientific Name	Avian leukosis virus ev/J [TAX:1401444]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avileu; Avian leukosis virus
GenBank	KP284572 Avian leukosis virus subgroup J isolate PDRC-59831, complete genome.
Evidence	GenBank
Evidence	Literature
Reference	PMID: 25858851
Authors	Malhotra S, Justice J 4th, Lee N, Li Y, Zavala G, Ruano M, Morgan R, Beemon K
Title	Complete genome sequence of an american avian leukosis virus subgroup j isolate that causes hemangiomas and myeloid leukosis.
Journal	Genome Announc. 2015 Apr 9;3(2).
DBLINKS	ViralZone: genus, family

Scientific Name	Avian myeloblastosis virus [TAX:11866]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avimyebla
GenBank	S74099 Avian myeloblastosis virus p27/CA gene, complete cds; and polyprotein II and v-myb product genes, partial cds.
Evidence	Literature
Reference	PMID: 6283631
Authors	Rushlow KE, Lautenberger JA, Papas TS, Baluda MA, Perbal B, Chirikjian JG, Reddy EP
Title	Nucleotide sequence of the transforming gene of avian myeloblastosis virus.
Journal	Science. 1982 Jun 25;216(4553):1421-3.
DBLINKS	ViralZone: genus, family

Scientific Name	Avian myelocytomatosis virus [TAX:11867]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; unclassified Alpharetrovirus
RefSeq	NC_001866 Avian myelocytomatosis virus, complete genome.
Evidence	Literature
Reference	PMID: 228482
Authors	Quade K
Title	Transformation of mammalian cells by avian myelocytomatosis virus and avian erythroblastosis virus.
Journal	Virology. 1979 Oct 30;98(2):461-5.
Comment	Culture cell line: chick embryo fibroblasts
DBLINKS	KEGG BRITE: NC_001866 ICTV: 202304985 ViralZone: genus, family

Scientific Name	Avian myelocytomatosis virus 29 [TAX:11868]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avimyecyt29
GenBank	AF033809 Avian myelocytomatosis virus 29, complete genome.
Evidence	Literature
Reference	PMID: 6284994
Authors	Vennstrom B, Sheiness D, Zabielski J, Bishop JM
Title	Isolation and characterization of c-myc, a cellular homolog of the oncogene (v-myc) of avian myelocytomatosis virus strain 29.
Journal	J Virol. 1982 Jun;42(3):773-9.
DBLINKS	ViralZone: genus, family

Scientific Name	Avian nephritis virus 1 [TAX:336960]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Stellavirales; Astroviridae; Avastrovirus; Avastrovirus galli; Avastrovirus 2
GenBank	HM029238 Avian nephritis virus 1 from China, complete genome.
Evidence	GenBank
Evidence	UniProt
Evidence	Literature
Reference	PMID: 21500638
Authors	Zhao W, Hua XG, Yuan L, Cui L, Shan TL, Dai XQ, Zhu AL, Yu Y, Zhu CX, Yang ZB
Title	Sequence analyses of the representative Chinese-prevalent strain of avian nephritis virus in healthy chicken flocks.
Journal	Avian Dis. 2011 Mar;55(1):65-9.
DBLINKS	ViralZone: family, genus

Scientific Name	avian paramyxovirus 1 [TAX:2560319]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus javaense
RefSeq	NC_039223 Newcastle disease virus isolate JSD0812, complete genome. NC_075404 Newcastle disease virus isolate chicken/N. Ireland/Ulster/67, complete genome.
Evidence	Literature
Reference	PMID: 23178584
Authors	De Battisti C, Salomoni A, Ormelli S, Monne I, Capua I, Cattoli G
Title	Rapid pathotyping of Newcastle Disease Virus by pyrosequencing.
Journal	J Virol Methods. 2013 Mar;188(1-2):13-20.
Evidence	Literature
Reference	PMID: 26634760
Authors	Liu M, Shen X, Cheng X, Li J, Dai Y
Title	Characterization and Sequencing of a Genotype VIId Newcastle Disease Virus Isolated from Laying Ducks in Jiangsu, China.
Journal	Genome Announc. 2015 Dec 3;3(6).
	Isolation and preliminary identification of a virulent Newcastle disease virus isolate of duck origin M Liu, YY Wei, YB Dai, X Cheng, S Zhou… - Chin J Anim Infect …, 2010 - en.cnki.com.cn
Comment	Laboratory host: Gallus gallus
DBLINKS	KEGG BRITE: NC_039223 NC_075404 ICTV: 202301591 ViralZone: family, genus

Scientific Name	avian paramyxovirus 10 [TAX:862945]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus falklandense
RefSeq	NC_025349 Avian paramyxovirus penguin/Falkland Islands/324/2007, complete genome.
Evidence	Literature
Reference	PMID: 20702635
Authors	Miller PJ, Afonso CL, Spackman E, Scott MA, Pedersen JC, Senne DA, Brown JD, Fuller CM, Uhart MM, Karesh WB, Brown IH, Alexander DJ, Swayne DE
Title	Evidence for a new avian paramyxovirus serotype 10 detected in rockhopper penguins from the Falkland Islands.
Journal	J Virol. 2010 Nov;84(21):11496-504.
Comment	Culture cell line: SPF ECE,vero cells, DF1 cells
DBLINKS	KEGG BRITE: NC_025349 ICTV: 202301600 ViralZone: family, genus

Scientific Name	avian paramyxovirus 11 [TAX:2560310]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus galliense
RefSeq	NC_025407 Avian paramyxovirus 11 isolate common_snipe/France/100212/2010, complete genome.
Evidence	Literature
Reference	PMID: 22733876
Authors	Briand FX, Henry A, Massin P, Jestin V
Title	Complete genome sequence of a novel avian paramyxovirus.
Journal	J Virol. 2012 Jul;86(14):7710.
Comment	Culture cell line: embryonated specific-pathogen-free chicken eggs
DBLINKS	KEGG BRITE: NC_025407 ICTV: 202301601 ViralZone: family, genus

Scientific Name	avian paramyxovirus 12 [TAX:2560320]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus taiwanense; Orthoavulavirus italiense
RefSeq	NC_025363 Avian paramyxovirus 12 isolate Wigeon/Italy/3920_1/2005, complete genome.
Evidence	Literature
Reference	PMID: 23708253
Authors	Terregino C, Aldous EW, Heidari A, Fuller CM, De Nardi R, Manvell RJ, Beato MS, Shell WM, Monne I, Brown IH, Alexander DJ, Capua I
Title	Antigenic and genetic analyses of isolate APMV/wigeon/Italy/3920-1/2005 indicate that it represents a new avian paramyxovirus (APMV-12).
Journal	Arch Virol. 2013 Nov;158(11):2233-43.
Comment	Laboratory host: chicken
DBLINKS	KEGG BRITE: NC_025363 ICTV: 202301602 ViralZone: family, genus

Scientific Name	avian paramyxovirus 13 [TAX:2560321]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus japanense
RefSeq	NC_030231 Avian paramyxovirus goose/Shimane/67/2000 viral cRNA, complete genome.
Evidence	Literature
Reference	PMID: 25866408
Authors	Yamamoto E, Ito H, Tomioka Y, Ito T
Title	Characterization of novel avian paramyxovirus strain APMV/Shimane67 isolated from migratory wild geese in Japan.
Journal	J Vet Med Sci. 2015 Sep;77(9):1079-85.
Comment	Culture cell line: DF-1, MDCK, MDBK, BHK, Vero, 293 cells
DBLINKS	KEGG BRITE: NC_030231 ICTV: 202301603 ViralZone: family, genus

Scientific Name	avian paramyxovirus 15 [TAX:1983777]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus peixense; Avian metaavulavirus 15
RefSeq	NC_034968 Avian paramyxovirus 15 isolate APMV-15/calidris_fuscicollis/Brazil/RS-1177/2012, partial genome.
Evidence	Literature
Reference	PMID: 28486490
Authors	Thomazelli LM, de Araújo J, Fabrizio T, Walker D, Reischak D, Ometto T, Barbosa CM, Petry MV, Webby RJ, Durigon EL
Title	Novel avian paramyxovirus (APMV-15) isolated from a migratory bird in South America.
Journal	PLoS One. 2017;12(5):e0177214.
Comment	Culture cell line: embryonating chicken eggs
DBLINKS	KEGG BRITE: NC_034968 ICTV: 202305575 ViralZone: family, genus

Scientific Name	avian paramyxovirus 16 [TAX:2560322]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus upoense
RefSeq	NC_039016 Avian paramyxovirus UPO216 isolate APMV-15/WB/Kr/UPO216/2014, complete genome.
Evidence	Literature
Reference	PMID: 28529504
Authors	Lee HJ, Kim JY, Lee YJ, Lee EK, Song BM, Lee HS, Choi KS
Title	A Novel Avian Paramyxovirus (Putative Serotype 15) Isolated from Wild Birds.
Journal	Front Microbiol. 2017;8:786.
Comment	Culture cell line: embryonated chicken eggs
DBLINKS	KEGG BRITE: NC_039016 ICTV: 202305576 ViralZone: family, genus

Scientific Name	avian paramyxovirus 2 [TAX:2560313]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus procarduelis; Metaavulavirus yucaipaense
RefSeq	NC_039230 Avian paramyxovirus 2 strain APMV-2/Chicken/California/Yucaipa/56, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 18603323
Authors	Subbiah M, Xiao S, Collins PL, Samal SK
Title	Complete sequence of the genome of avian paramyxovirus type 2 (strain Yucaipa) and comparison with other paramyxoviruses.
Journal	Virus Res. 2008 Oct;137(1):40-8.
DBLINKS	KEGG BRITE: NC_039230 ICTV: 202301592 ViralZone: family, genus

Scientific Name	avian paramyxovirus 6 [TAX:2560316]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus calidris; Metaavulavirus hongkongense
RefSeq	NC_039194 Avian paramyxovirus 6 strain APMV-6/Goose/FarEast/4440/2003, complete genome.
Evidence	Literature
Reference	PMID: 20206652
Authors	Xiao S, Subbiah M, Kumar S, De Nardi R, Terregino C, Collins PL, Samal SK
Title	Complete genome sequences of avian paramyxovirus serotype 6 prototype strain Hong Kong and a recent novel strain from Italy: evidence for the existence of subgroups within the serotype.
Journal	Virus Res. 2010 Jun;150(1-2):61-72.
Comment	Culture cell line: embryonated chicken eggs
DBLINKS	KEGG BRITE: NC_039194 ICTV: 202301596 ViralZone: family, genus

Scientific Name	avian paramyxovirus 8 [TAX:2560318]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Metaavulavirus; Metaavulavirus delawarense
RefSeq	NC_039195 Avian paramyxovirus 8 strain goose/Delaware/1053/76, complete genome.
Evidence	Literature
Reference	PMID: 19341613
Authors	Paldurai A, Subbiah M, Kumar S, Collins PL, Samal SK
Title	Complete genome sequences of avian paramyxovirus type 8 strains goose/Delaware/1053/76 and pintail/Wakuya/20/78.
Journal	Virus Res. 2009 Jun;142(1-2):144-53.
Comment	Culture cell line: embryonated specific pathogen free chicken eggs, chicken embryo kidney cells, 293T cells
DBLINKS	KEGG BRITE: NC_039195 ICTV: 202301598 ViralZone: family, genus

Scientific Name	avian paramyxovirus 9 [TAX:2560326]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus newyorkense
RefSeq	NC_025390 Avian paramyxovirus 9 strain duck/New York/22/1978, complete genome.
Evidence	Literature
Reference	PMID: 19185593
Authors	Samuel AS, Kumar S, Madhuri S, Collins PL, Samal SK
Title	Complete sequence of the genome of avian paramyxovirus type 9 and comparison with other paramyxoviruses.
Journal	Virus Res. 2009 Jun;142(1-2):10-8.
Comment	Culture cell line: SPF embryonated chicken eggs, CEK, DF-1, Vero, BHK21 cells
DBLINKS	KEGG BRITE: NC_025390 ICTV: 202301599 ViralZone: family, genus

Scientific Name	Avian retrovirus IC10 [TAX:11874]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; unclassified Alpharetrovirus
GenBank	X13744 Avian Retrovirus IC10 proviral genome.
Evidence	Literature
Reference	PMID: 2537952
Authors	Eychène A, Marx M, Dezélée P, Calothy G
Title	Complete nucleotide sequence of IC10, a retrovirus containing the Rmil oncogene transduced in chicken neuroretina cells infected with avian retrovirus RAV-1.
Journal	Nucleic Acids Res. 1989 Feb 11;17(3):1250.
Comment	Culture cell line: chicken neuroretina cells
DBLINKS	ViralZone: genus, family

Scientific Name	Avian sarcoma virus CT10 [TAX:11878]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avisar10
RefSeq	NC_038922 Avian sarcoma virus CT10 genomic sequence.
Evidence	Literature
Reference	PMID: 2450282
Authors	Mayer BJ, Hamaguchi M, Hanafusa H
Title	A novel viral oncogene with structural similarity to phospholipase C.
Journal	Nature. 1988 Mar 17;332(6161):272-5.
Comment	Culture cell line: CEF, QT6 cells
DBLINKS	KEGG BRITE: NC_038922 ICTV: 202304986 ViralZone: genus, family

Scientific Name	avihepatovirus A1 [TAX:1006061]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avihepatovirus; Avihepatovirus ahepati; Avihepatovirus A
RefSeq	NC_008250 Duck hepatitis A virus 1 strain R85952, complete genome.
Evidence	Literature
Reference	PMID: 17030865
Authors	Kim MC, Kwon YK, Joh SJ, Lindberg AM, Kwon JH, Kim JH, Kim SJ
Title	Molecular analysis of duck hepatitis virus type 1 reveals a novel lineage close to the genus Parechovirus in the family Picornaviridae.
Journal	J Gen Virol. 2006 Nov;87(Pt 11):3307-16.
Comment	laboratory host: Labo9-day-old embryonated chicken eggs
DBLINKS	KEGG BRITE: NC_008250 ICTV: 202301965 ViralZone: family, genus

Scientific Name	avisivirus B1 [TAX:1534545]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avisivirus; Avisivirus begallu; Avisivirus B
RefSeq	NC_024766 Chicken picornavirus 2 isolate 44C, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_024766 ICTV: 202301968 ViralZone: genus, family

Scientific Name	avisivirus C1 [TAX:1534546]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avisivirus; Avisivirus cechici; Avisivirus C
RefSeq	NC_024767 Chicken picornavirus 3 isolate 45C, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_024767 ICTV: 202301969 ViralZone: genus, family

Scientific Name	Avisivirus Pf-CHK1/AsV [TAX:1766559]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Avisivirus; unclassified Avisivirus
RefSeq	NC_028970 Avisivirus Pf-CHK1/AsV, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26707271
Authors	Boros Á, Pankovics P, Adonyi Á, Fenyvesi H, Day JM, Phan TG, Delwart E, Reuter G
Title	A diarrheic chicken simultaneously co-infected with multiple picornaviruses: Complete genome analysis of avian picornaviruses representing up to six genera.
Journal	Virology. 2016 Feb;489:63-74.
DBLINKS	KEGG BRITE: NC_028970 ViralZone: genus, family

Scientific Name	Budgerigar fledgling disease virus - 1 [TAX:133789]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Gammapolyomavirus; Gammapolyomavirus avis
RefSeq	NC_004764 Budgerigar fledgling disease virus - 1, complete genome.
Evidence	Literature
Reference	PMID: 2838972
Authors	Rott O, Kröger M, Müller H, Hobom G
Title	The genome of budgerigar fledgling disease virus, an avian polyomavirus.
Journal	Virology. 1988 Jul;165(1):74-86.
Comment	chicken
DBLINKS	KEGG BRITE: NC_004764 ICTV: 202304486 ViralZone: family, genus

Scientific Name	Calicivirus chicken/V0021/Bayern/2004 [TAX:889389]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; unclassified Caliciviridae
RefSeq	NC_075411 Calicivirus chicken/V0021/Bayern/2004, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_075411 ICTV: 202306495 ViralZone: family

Scientific Name	Chicken anemia virus [TAX:12618]
Lineage	Viruses; Viruses incertae sedis; Anelloviridae; Gyrovirus; Gyrovirus chickenanemia
RefSeq	NC_001427 Chicken anemia virus, complete genome.
DBLINKS	KEGG BRITE: NC_001427 ICTV: 202302554 ViralZone: family, genus

Scientific Name	Chicken associated cyclovirus 1 [TAX:2050596]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus adie
GenBank	HQ738643 Chicken associated cyclovirus 1 isolate NGchicken8, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family, genus

Scientific Name	Chicken associated cyclovirus 2 [TAX:2109365]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus naahoohai
RefSeq	NC_040639 Chicken associated cyclovirus 2 strain RS/BR/2015/4R, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040639 ICTV: 202308680 ViralZone: family, genus

Scientific Name	Chicken associated huchismacovirus 1 [TAX:2169932]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus; Huchismacovirus chicas1
RefSeq	NC_039059 Chicken associated huchismacovirus 1, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 28100302
Authors	Lima DA, Cibulski SP, Finkler F, Teixeira TF, Varela APM, Cerva C, Loiko MR, Scheffer CM, Dos Santos HF, Mayer FQ, Roehe PM
Title	Faecal virome of healthy chickens reveals a large diversity of the eukaryote viral community, including novel circular ssDNA viruses.
Journal	J Gen Virol. 2017 Apr;98(4):690-703.
DBLINKS	KEGG BRITE: NC_039059 ICTV: 202305959 ViralZone: family

Scientific Name	Chicken associated huchismacovirus 2 [TAX:2169933]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus; Huchismacovirus chicas2
RefSeq	NC_039060 Chicken associated huchismacovirus 2, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 28100302
Authors	Lima DA, Cibulski SP, Finkler F, Teixeira TF, Varela APM, Cerva C, Loiko MR, Scheffer CM, Dos Santos HF, Mayer FQ, Roehe PM
Title	Faecal virome of healthy chickens reveals a large diversity of the eukaryote viral community, including novel circular ssDNA viruses.
Journal	J Gen Virol. 2017 Apr;98(4):690-703.
DBLINKS	KEGG BRITE: NC_039060 ICTV: 202305960 ViralZone: family

Scientific Name	Chicken associated smacovirus [TAX:1932006]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Huchismacovirus; unclassified Huchismacovirus
RefSeq	NC_033275 Chicken associated smacovirus strain RS/BR/2015/4, complete genome. NC_075342 Chicken associated smacovirus strain RS/BR/2015/1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_033275 NC_075342 ICTV: 202309515 ViralZone: family

Scientific Name	Chicken astrovirus [TAX:336959]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Stellavirales; Astroviridae; Avastrovirus; unclassified Avastrovirus
RefSeq	NC_003790 Chicken astrovirus, complete genome.
Evidence	Literature
Reference	PMID: 10954549
Authors	Imada T, Yamaguchi S, Mase M, Tsukamoto K, Kubo M, Morooka A
Title	Avian nephritis virus (ANV) as a new member of the family Astroviridae and construction of infectious ANV cDNA.
Journal	J Virol. 2000 Sep;74(18):8487-93.
DBLINKS	KEGG BRITE: NC_003790 ICTV: 202302623 ViralZone: family, genus

Scientific Name	Chicken calicivirus [TAX:1172196]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Bavovirus; Bavovirus bavariaense; Bavaria virus
RefSeq	NC_033081 Chicken calicivirus strain RS/BR/2015, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 28100302
Authors	Lima DA, Cibulski SP, Finkler F, Teixeira TF, Varela APM, Cerva C, Loiko MR, Scheffer CM, Dos Santos HF, Mayer FQ, Roehe PM
Title	Faecal virome of healthy chickens reveals a large diversity of the eukaryote viral community, including novel circular ssDNA viruses.
Journal	J Gen Virol. 2017 Apr;98(4):690-703.
DBLINKS	KEGG BRITE: NC_033081 ViralZone: family

Scientific Name	Chicken chapparvovirus 2 [TAX:2109367]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Hamaparvovirinae; Chaphamaparvovirus; Chaphamaparvovirus galliform2
RefSeq	NC_076004 Chicken chapparvovirus 2 strain RS/BR/15/2S NS1 (QKJ70_gp1) and capsid protein (QKJ70_gp2) genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076004 ICTV: 202307334 ViralZone: family

Scientific Name	chicken chapparvovirus HK [TAX:2849623]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Hamaparvovirinae; Chaphamaparvovirus; Chaphamaparvovirus galliform3
RefSeq	NC_075989 Chicken chapparvovirus HK isolate ParvoQ45/2013 NS1 (NS1) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_075989 ViralZone: family

Scientific Name	Chicken genomovirus mg4_1165 [TAX:2720941]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga5
RefSeq	NC_076432 Chicken genomovirus mg4_1165, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076432 ICTV: 202309090 ViralZone: family, genus

Scientific Name	Chicken genomovirus mg4_1173 [TAX:2720942]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga3
RefSeq	NC_076433 Chicken genomovirus mg4_1173, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076433 ICTV: 202309088 ViralZone: family, genus

Scientific Name	Chicken genomovirus mg4_1218 [TAX:2720945]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus galga3
RefSeq	NC_076434 Chicken genomovirus mg4_1218, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076434 ICTV: 202309066 ViralZone: family, genus

Scientific Name	Chicken genomovirus mg4_1247 [TAX:2720946]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga1
RefSeq	NC_076435 Chicken genomovirus mg4_1247, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076435 ICTV: 202309084 ViralZone: family, genus

Scientific Name	Chicken genomovirus mg7_73 [TAX:2720949]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus galga1
RefSeq	NC_076436 Chicken genomovirus mg7_73, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076436 ICTV: 202309063 ViralZone: family, genus

Scientific Name	Chicken genomovirus mg7_78 [TAX:2720951]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga4
RefSeq	NC_076437 Chicken genomovirus mg7_78, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076437 ICTV: 202309089 ViralZone: family, genus

Scientific Name	Chicken genomovirus mg8_401 [TAX:2720952]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus galga2
RefSeq	NC_076438 Chicken genomovirus mg8_401, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076438 ICTV: 202309064 ViralZone: family, genus

Scientific Name	Chicken microvirus mg4_115 [TAX:2720914]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379630 Chicken microvirus mg4_115, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg4_164 [TAX:2720915]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379631 Chicken microvirus mg4_164, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg4_207 [TAX:2720916]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379632 Chicken microvirus mg4_207, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg4_76 [TAX:2720917]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379629 Chicken microvirus mg4_76, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg5_146 [TAX:2720918]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379633 Chicken microvirus mg5_146, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg6_154 [TAX:2720919]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379634 Chicken microvirus mg6_154, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg6_218 [TAX:2720920]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379635 Chicken microvirus mg6_218, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg7_1 [TAX:2720921]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379636 Chicken microvirus mg7_1, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg7_10 [TAX:2720922]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379640 Chicken microvirus mg7_10, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg7_14 [TAX:2720923]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379641 Chicken microvirus mg7_14, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg7_16 [TAX:2720924]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379642 Chicken microvirus mg7_16, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg7_19 [TAX:2720925]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379643 Chicken microvirus mg7_19, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg7_20 [TAX:2720926]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379644 Chicken microvirus mg7_20, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg7_25 [TAX:2720927]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379645 Chicken microvirus mg7_25, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg7_6 [TAX:2720928]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379637 Chicken microvirus mg7_6, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg7_7 [TAX:2720929]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379638 Chicken microvirus mg7_7, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg7_8 [TAX:2720930]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379639 Chicken microvirus mg7_8, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg8_102 [TAX:2720931]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379650 Chicken microvirus mg8_102, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg8_109 [TAX:2720932]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379651 Chicken microvirus mg8_109, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg8_41 [TAX:2720933]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379646 Chicken microvirus mg8_41, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg8_45 [TAX:2720934]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379647 Chicken microvirus mg8_45, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg8_48 [TAX:2720935]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379648 Chicken microvirus mg8_48, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken microvirus mg8_95 [TAX:2720936]
Lineage	Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae; Microvirus; unclassified Microvirus
GenBank	MN379649 Chicken microvirus mg8_95, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Chicken orivirus 1 [TAX:1565990]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Orivirus; Orivirus aoroshaza; Orivirus A
RefSeq	NC_025432 Chicken orivirus 1 strain chicken/Pf-CHK1/2013/HUN, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025432 ICTV: 202305604 ViralZone: family

Scientific Name	Chicken parvovirus [TAX:1136878]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Aveparvovirus; Aveparvovirus galliform1
GenBank	KJ486491 Chicken parvovirus isolate ADL120686, complete genome.
Evidence	GenBank
Evidence	Literature
Reference	PMID: 25510852
Authors	Koo BS, Lee HR, Jeon EO, Han MS, Min KC, Lee SB, Bae YJ, Cho SH, Mo JS, Kwon HM, Sung HW, Kim JN, Mo IP
Title	Genetic characterization of three novel chicken parvovirus strains based on analysis of their coding sequences.
Journal	Avian Pathol. 2015;44(1):28-34.
DBLINKS	ViralZone: family, genus

Scientific Name	Chicken parvovirus ABU-P1 [TAX:717641]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Aveparvovirus; Aveparvovirus galliform1
RefSeq	NC_024452 Chicken parvovirus ABU-P1, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_024452 ViralZone: family, genus

Scientific Name	Chicken picobirnavirus [TAX:1930304]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Picobirnaviridae; Orthopicobirnavirus; unclassified Orthopicobirnavirus
RefSeq	NC_040438 Chicken picobirnavirus strain PBV/CHK/M3841/HUN/2011 segment RNA1, complete sequence. NC_040439 Chicken picobirnavirus strain PBV/CHK/M3841/HUN/2011 segment RNA2, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 30191372
Authors	Pankovics P, Boros Á, Nemes C, Kapusinszky B, Delwart E, Reuter G
Title	Molecular characterization of a novel picobirnavirus in a chicken.
Journal	Arch Virol. 2018 Dec;163(12):3455-3458.
DBLINKS	KEGG BRITE: NC_040438 NC_040439 ViralZone: family, genus

Scientific Name	Chicken picornavirus 1 [TAX:1534544]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; unclassified Picornaviridae
RefSeq	NC_024765 Chicken picornavirus 1 isolate 55C, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_024765 ViralZone: family

Scientific Name	Chicken picornavirus 4 [TAX:1534547]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; unclassified Picornaviridae
RefSeq	NC_024768 Chicken picornavirus 4 isolate 5C, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_024768 ViralZone: family

Scientific Name	Chicken smacovirus mg4_881 [TAX:2720958]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas2
RefSeq	NC_076439 Chicken smacovirus mg4_881, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076439 ICTV: 202309516 ViralZone: family

Scientific Name	Chicken smacovirus mg4_885 [TAX:2720959]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas4
RefSeq	NC_076440 Chicken smacovirus mg4_885, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076440 ICTV: 202309518 ViralZone: family

Scientific Name	Chicken smacovirus mg4_964 [TAX:2720960]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas6
RefSeq	NC_076441 Chicken smacovirus mg4_964, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076441 ICTV: 202309520 ViralZone: family

Scientific Name	Chicken smacovirus mg5_1081 [TAX:2720961]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas7
RefSeq	NC_076442 Chicken smacovirus mg5_1081, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076442 ICTV: 202309521 ViralZone: family

Scientific Name	Chicken smacovirus mg5_1212 [TAX:2720962]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas3
RefSeq	NC_076443 Chicken smacovirus mg5_1212, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076443 ICTV: 202309517 ViralZone: family

Scientific Name	Chicken smacovirus mg7_67 [TAX:2720966]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus chicas5
RefSeq	NC_076444 Chicken smacovirus mg7_67, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076444 ICTV: 202309519 ViralZone: family

Scientific Name	Chicken stool associated circular virus 1 [TAX:2109373]
Lineage	Viruses; unclassified viruses
RefSeq	NC_040316 Chicken stool associated circular virus 1 strain RS/BR/2015/1R, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040316 ICTV: 202318409

Scientific Name	Chicken stool associated circular virus 2 [TAX:2109374]
Lineage	Viruses; unclassified viruses
RefSeq	NC_040315 Chicken stool associated circular virus 2 strain RS/BR/2015/1R, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040315

Scientific Name	Chicken stool-associated circular virus [TAX:1930302]
Lineage	Viruses; unclassified viruses
RefSeq	NC_033272 Chicken stool-associated circular virus strain RS/BR/2015, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_033272

Scientific Name	Chicken stool-associated gemycircularvirus [TAX:1930298]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykrogvirus; Gemykrogvirus galga2
RefSeq	NC_033270 Chicken stool-associated gemycircularvirus strain RS/BR/2015, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_033270 ICTV: 202309086 ViralZone: family, genus

Scientific Name	Chicken virus mg5_2876 [TAX:2720907]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Rivendellvirales; Naryaviridae; Nauglamirvirus; Nauglamirvirus anduin
RefSeq	NC_076730 Chicken virus mg5_2876, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 34946202
Authors	Chrzastek K, Kraberger S, Schmidlin K, Fontenele RS, Kulkarni A, Chappell L, Dufour-Zavala L, Kapczynski DR, Varsani A
Title	Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.
Journal	Microorganisms. 2021 Dec 16;9(12).
DBLINKS	KEGG BRITE: NC_076730 ICTV: 202313287 ViralZone: family

Scientific Name	Circovirus NGchicken38/NGA/2009 [TAX:942030]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; Circovirus pigeon; Pigeon circovirus
GenBank	HQ738642 Circovirus NGchicken38/NGA/2009 isolate NGchicken38, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: genus, family

Scientific Name	Cotia virus [TAX:39444]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Oryzopoxvirus; Oryzopoxvirus cotia
GenBank	HQ647181 Cotia virus, complete genome.
Evidence	Literature
Reference	PMID: 22345477
Authors	Afonso PP, Silva PM, Schnellrath LC, Jesus DM, Hu J, Yang Y, Renne R, Attias M, Condit RC, Moussatché N, Damaso CR
Title	Biological characterization and next-generation genome sequencing of the unclassified Cotia virus SPAn232 (Poxviridae).
Journal	J Virol. 2012 May;86(9):5039-54.
Comment	Culture cell line:BSC-40, C6, RK-13, L-929, Hep-2, MEF, Vero, CEF
DBLINKS	ViralZone: family

Scientific Name	Cyclovirus NGchicken15/NGA/2009 [TAX:942037]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus adie; Chicken associated cyclovirus 1
RefSeq	NC_014930 Cyclovirus NGchicken15/NGA/2009, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_014930 ViralZone: family, genus

Scientific Name	Cyclovirus NGchicken8/NGA/2009 [TAX:942036]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus adie; Chicken associated cyclovirus 1
RefSeq	NC_038406 Cyclovirus NGchicken8/NGA/2009 isolate NGchicken8, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038406 ICTV: 202302948 ViralZone: family, genus

Scientific Name	Duck atadenovirus A [TAX:130328]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Barthadenovirus; Barthadenovirus galloanserae
RefSeq	AC_000004 Duck adenovirus A, complete genome. NC_001813 Duck adenovirus A, complete genome.
Evidence	Literature
Reference	PMID: 9375018
Authors	Hess M, Blöcker H, Brandt P
Title	The complete nucleotide sequence of the egg drop syndrome virus: an intermediate between mastadenoviruses and aviadenoviruses.
Journal	Virology. 1997 Nov 10;238(1):145-56.
DBLINKS	KEGG BRITE: AC_000004 NC_001813 ICTV: 202302391 ViralZone: genus, family

Scientific Name	enterovirus D70 [TAX:12090]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Enterovirus; Enterovirus deconjuncti; Enterovirus D
GenBank	D00820 Human enterovirus 70 genomic RNA, complete genome, strain: J670/71.
KEGG DISEASE	H01421 Acute hemorrhagic conjunctivitis
Evidence	Literature
Reference	PMID: 2172447
Authors	Ryan MD, Jenkins O, Hughes PJ, Brown A, Knowles NJ, Booth D, Minor PD, Almond JW
Title	The complete nucleotide sequence of enterovirus type 70: relationships with other members of the picornaviridae.
Journal	J Gen Virol. 1990 Oct;71 ( Pt 10):2291-9.
Comment	Culture cell line: HEp-2c cells
DBLINKS	KEGG GENOME: T40334 ViralZone: genus, family

Scientific Name	Faeces associated gemycircularvirus 17 [TAX:1843737]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus chicas2; Chicken associated gemycircularvirus 2
RefSeq	NC_030140 Faeces associated gemycircularvirus 17 isolate 27_Fec16497_chicken, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_030140 ICTV: 202303559 ViralZone: family, genus

Scientific Name	Faeces associated gemycircularvirus 20 [TAX:1843740]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus chicas1; Chicken associated gemycircularvirus 1
RefSeq	NC_030141 Faeces associated gemycircularvirus 20 isolate 27_Fec79971_chicken, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_030141 ICTV: 202303558 ViralZone: family, genus

Scientific Name	Flamingopox virus FGPVKD09 [TAX:2059380]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Avipoxvirus; unclassified Avipoxvirus
RefSeq	NC_036582 Flamingopox virus FGPVKD09, complete genome.
Evidence	Literature
Reference	PMID: 29207949
Authors	Carulei O, Douglass N, Williamson AL
Title	Comparative analysis of avian poxvirus genomes, including a novel poxvirus from lesser flamingos (Phoenicopterus minor), highlights the lack of conservation of the central region.
Journal	BMC Genomics. 2017 Dec 6;18(1):947.
DBLINKS	KEGG BRITE: NC_036582 ICTV: 202307141 ViralZone: family, genus

Scientific Name	Fowl adenovirus 9 [TAX:172864]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus gallinae; Fowl aviadenovirus D
GenBank	AF083975 Fowl adenovirus 9, complete genome.
Evidence	Literature
Reference	PMID: 12441071
Authors	Ojkic D, Krell PJ, Nagy E
Title	Unique features of fowl adenovirus 9 gene transcription.
Journal	Virology. 2002 Oct 25;302(2):274-85.
Comment	Culture cell line: CH-SAH cells
DBLINKS	ViralZone: genus, family

Scientific Name	Fowl aviadenovirus 1 [TAX:10553]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus ventriculi; Fowl aviadenovirus A
GenBank	U46933 Avian adenovirus CELO, complete genome.
Evidence	Literature
Reference	PMID: 8627769
Authors	Chiocca S, Kurzbauer R, Schaffner G, Baker A, Mautner V, Cotten M
Title	The complete DNA sequence and genomic organization of the avian adenovirus CELO.
Journal	J Virol. 1996 May;70(5):2939-49.
Comment	Culture cell line: chicken embryos
DBLINKS	ViralZone: genus, family

Scientific Name	Fowl aviadenovirus 5 [TAX:172861]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus quintum; Fowl aviadenovirus B
RefSeq	NC_021221 Fowl adenovirus 5 strain 340, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_021221 ICTV: 202302401 ViralZone: genus, family

Scientific Name	Fowl aviadenovirus 6 [TAX:172862]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus hepatitidis; Fowl aviadenovirus E
RefSeq	NC_038332 Fowl adenovirus 6 strain CR119, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038332 ICTV: 202302404 ViralZone: genus, family

Scientific Name	Fowl aviadenovirus A [TAX:190061]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus ventriculi
RefSeq	AC_000014 Fowl adenovirus A, complete genome. NC_001720 Fowl adenovirus A, complete genome.
Evidence	Literature
Reference	PMID: 8627769
Authors	Chiocca S, Kurzbauer R, Schaffner G, Baker A, Mautner V, Cotten M
Title	The complete DNA sequence and genomic organization of the avian adenovirus CELO.
Journal	J Virol. 1996 May;70(5):2939-49.
Comment	chicken embryo Culture cell line:chicken embryo
DBLINKS	KEGG BRITE: AC_000014 NC_001720 ICTV: 202302400 ViralZone: genus, family

Scientific Name	Fowl aviadenovirus C [TAX:190063]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus hydropericardii
RefSeq	NC_015323 Fowl adenovirus C, complete genome. NC_075488 Fowl adenovirus C complete genome, isolate KR5.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_015323 NC_075488 ICTV: 202302402 ViralZone: genus, family

Scientific Name	Fowl aviadenovirus D [TAX:190064]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus gallinae
RefSeq	AC_000013 Fowl adenovirus D, complete genome. NC_000899 Fowl adenovirus D, complete genome.
Evidence	Literature
Reference	PMID: 9780058
Authors	Cao JX, Krell PJ, Nagy E
Title	Sequence and transcriptional analysis of terminal regions of the fowl adenovirus type 8 genome.
Journal	J Gen Virol. 1998 Oct;79 ( Pt 10):2507-16.
Comment	Culture cell line: CH-SAH cell Culture cell line: CH-SAH cells
Evidence	Literature
Reference	PMID: 12441071
Authors	Ojkic D, Krell PJ, Nagy E
Title	Unique features of fowl adenovirus 9 gene transcription.
Journal	Virology. 2002 Oct 25;302(2):274-85.
Comment	Culture cell line: CH-SAH cell Culture cell line: CH-SAH cells
DBLINKS	KEGG BRITE: AC_000013 NC_000899 ICTV: 202302403 ViralZone: genus, family

Scientific Name	Fowl aviadenovirus E [TAX:190065]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Aviadenovirus hepatitidis
RefSeq	NC_014969 Fowl adenovirus E, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_014969 ViralZone: genus, family

Scientific Name	Fowlpox virus [TAX:10261]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Avipoxvirus; Avipoxvirus fowlpox
RefSeq	NC_002188 Fowlpox virus, complete genome.
Evidence	Literature
Reference	PMID: 10729156
Authors	Afonso CL, Tulman ER, Lu Z, Zsak L, Kutish GF, Rock DL
Title	The genome of fowlpox virus.
Journal	J Virol. 2000 Apr;74(8):3815-31.
DBLINKS	KEGG BRITE: NC_002188 ICTV: 202304741 ViralZone: family, genus

Scientific Name	Fujinami sarcoma virus [TAX:11885]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avifujsar
RefSeq	NC_001403 Fujinami sarcoma virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001403 ICTV: 202304987 ViralZone: genus, family

Scientific Name	Gallid alphaherpesvirus 1 [TAX:10386]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Iltovirus; Iltovirus gallidalpha1
RefSeq	NC_006623 Gallid herpesvirus 1, complete genome. NC_075683 Gallid herpesvirus 1 strain SA2, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_006623 NC_075683 ICTV: 202301414 ViralZone: genus, family

Scientific Name	Gallid alphaherpesvirus 2 [TAX:10390]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha2
RefSeq	NC_002229 Gallid herpesvirus 2, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_002229 ICTV: 202301419 ViralZone: genus, family

Scientific Name	Gallid alphaherpesvirus 3 [TAX:35250]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha3
RefSeq	NC_002577 Gallid herpesvirus 3, complete genome. NC_075702 Gallid herpesvirus 3 strain SB-1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_002577 NC_075702 ICTV: 202301420 ViralZone: genus, family

Scientific Name	Gallid herpesvirus 2 strain 814 [TAX:1123959]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha2; Gallid alphaherpesvirus 2
GenBank	JF742597 Gallid herpesvirus 2 strain 814, complete genome.
Evidence	GenBank
Evidence	Literature
Reference	PMID: 21984218
Authors	Zhang F, Liu CJ, Zhang YP, Li ZJ, Liu AL, Yan FH, Cong F, Cheng Y
Title	Comparative full-length sequence analysis of Marek's disease virus vaccine strain 814.
Journal	Arch Virol. 2012 Jan;157(1):177-83.
Comment	Culture cell line: chicken embryo fibroblasts
DBLINKS	ViralZone: genus, family

Scientific Name	gallivirus A1 [TAX:2764087]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Gallivirus; Gallivirus afowli; Gallivirus A
RefSeq	NC_024770 Gallivirus A1 isolate 518C, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 24906980
Authors	Lau SKP, Woo PCY, Yip CCY, Li KSM, Fan RYY, Bai R, Huang Y, Chan KH, Yuen KY
Title	Chickens host diverse picornaviruses originated from potential interspecies transmission with recombination.
Journal	J Gen Virol. 2014 Sep;95(Pt 9):1929-1944.
DBLINKS	KEGG BRITE: NC_024770 ICTV: 202301999 ViralZone: genus, family

Scientific Name	Gallivirus Pf-CHK1/GV [TAX:1766557]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Gallivirus; unclassified Gallivirus
RefSeq	NC_028964 Gallivirus Pf-CHK1/GV, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_028964 ViralZone: genus, family

Scientific Name	Gallus gallus enteric parvovirus [TAX:1633569]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Aveparvovirus; Aveparvovirus galliform1
GenBank	KM598414 Gallus gallus enteric parvovirus isolate ChPV 367, complete genome.
Evidence	GenBank
Evidence	Literature
Reference	PMID: 26292551
Authors	Zsak L, Cha RM, Li F, Day JM
Title	Host Specificity and Phylogenetic Relationships of Chicken and Turkey Parvoviruses.
Journal	Avian Dis. 2015 Mar;59(1):157-61.
DBLINKS	ViralZone: family, genus

Scientific Name	Goose paramyxovirus SF02 [TAX:204987]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; unclassified Avulavirinae
RefSeq	NC_005036 Goose paramyxovirus SF02, complete genome.
Evidence	Literature
Reference	PMID: 15744558
Authors	Zou J, Shan S, Yao N, Gong Z
Title	Complete genome sequence and biological characterizations of a novel goose paramyxovirus-SF02 isolated in China.
Journal	Virus Genes. 2005 Jan;30(1):13-21.
Comment	Chicken
DBLINKS	KEGG BRITE: NC_005036 ViralZone: family

Scientific Name	Infectious bronchitis virus [TAX:11120]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Gammacoronavirus galli; Avian coronavirus
RefSeq	NC_001451 Avian infectious bronchitis virus, complete genome. NC_048213 Infectious bronchitis virus isolate Ind-TN92-03, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001451 NC_048213 ICTV: 202301880, 202307500 ViralZone: family, genus

Scientific Name	Infectious bronchitis virus ITA/90254/2005 [TAX:658929]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Gammacoronavirus galli; Avian coronavirus; Infectious bronchitis virus
GenBank	FN430414 Infectious bronchitis virus ITA/90254/2005, complete genome.
Evidence	Literature
Reference	PMID: 19625463
Authors	Ducatez MF, Martin AM, Owoade AA, Olatoye IO, Alkali BR, Maikano I, Snoeck CJ, Sausy A, Cordioli P, Muller CP
Title	Characterization of a new genotype and serotype of infectious bronchitis virus in Western Africa.
Journal	J Gen Virol. 2009 Nov;90(Pt 11):2679-85.
DBLINKS	ViralZone: family, genus

Scientific Name	Infectious bronchitis virus NGA/A116E7/2006 [TAX:658930]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; Igacovirus; Gammacoronavirus galli; Avian coronavirus; Infectious bronchitis virus
GenBank	FN430415 Infectious bronchitis virus NGA/A116E7/2006, complete genome.
Evidence	Literature
Reference	PMID: 19625463
Authors	Ducatez MF, Martin AM, Owoade AA, Olatoye IO, Alkali BR, Maikano I, Snoeck CJ, Sausy A, Cordioli P, Muller CP
Title	Characterization of a new genotype and serotype of infectious bronchitis virus in Western Africa.
Journal	J Gen Virol. 2009 Nov;90(Pt 11):2679-85.
DBLINKS	ViralZone: family, genus

Scientific Name	Infectious bursal disease virus [TAX:10995]
Lineage	Viruses; Riboviria; Orthornavirae; Birnaviridae; Avibirnavirus; Avibirnavirus gumboroense
RefSeq	NC_077769 Infectious bursal disease virus RNA for small ORF (P2). NC_077770 Infectious bursal disease virus RNA for possible polymerase (P2).
Evidence	RefSeq
Evidence	UniProt
Evidence	Literature
Reference	PMID: 7747460
Authors	Mundt E, Müller H
Title	Complete nucleotide sequences of 5'- and 3'-noncoding regions of both genome segments of different strains of infectious bursal disease virus.
Journal	Virology. 1995 May 10;209(1):10-8.
DBLINKS	KEGG BRITE: NC_077769 NC_077770 ICTV: 202302752 ViralZone: genus, family

Scientific Name	Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) [TAX:183764]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Insthoviricetes; Articulavirales; Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus influenzae; Influenza A virus; H1N1 subtype; Influenza A virus (A/Puerto Rico/8/1934(H1N1))
GenBank	AF389115 Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 1, complete sequence. AF389116 Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 2, complete sequence. AF389117 Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 3, complete sequence. AF389118 Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 4, complete sequence. AF389119 Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 5, complete sequence. AF389120 Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 6, complete sequence. AF389121 Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 7, complete sequence. AF389122 Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) segment 8, complete sequence.
Evidence	Literature
Reference	PMID: 11779399
Authors	Schickli JH, Flandorfer A, Nakaya T, Martinez-Sobrido L, García-Sastre A, Palese P
Title	Plasmid-only rescue of influenza A virus vaccine candidates.
Journal	Philos Trans R Soc Lond B Biol Sci. 2001 Dec 29;356(1416):1965-73.
DBLINKS	ViralZone: genus, serotype

Scientific Name	Marek's disease virus serotype 2 MDV2 [TAX:36353]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus gallidalpha3; Gallid alphaherpesvirus 3
GenBank	AB024414 Gallid herpesvirus 1 (serotype 2) DNA, UL region complete sequence.
Evidence	Literature
Reference	PMID: 10458102
Authors	Kato K, Jang HK, Izumiya Y, Cai JS, Tsushima Y, Miyazawa T, Kai C, Mikami T
Title	Identification and sequence analysis of the Marek's disease virus serotype 2 homologous genes of the herpes simplex virus type 1 UL25, UL26 and UL26.5 genes.
Journal	J Vet Med Sci. 1999 Jul;61(7):787-93.
DBLINKS	ViralZone: genus, family

Scientific Name	megrivirus C1 [TAX:1477515]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Megrivirus; Megrivirus chigalli; Megrivirus C
RefSeq	NC_039235 Chicken megrivirus strain chicken/B21-CHV/2012/HUN, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 24672039
Authors	Boros Á, Pankovics P, Knowles NJ, Nemes C, Delwart E, Reuter G
Title	Comparative complete genome analysis of chicken and Turkey megriviruses (family picornaviridae): long 3' untranslated regions with a potential second open reading frame and evidence for possible recombination.
Journal	J Virol. 2014 Jun;88(11):6434-43.
DBLINKS	KEGG BRITE: NC_039235 ICTV: 202305601 ViralZone: genus, family

Scientific Name	megrivirus C2 [TAX:2847848]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Megrivirus; Megrivirus chigalli; Megrivirus C
RefSeq	NC_024769 Megrivirus C2 isolate 27C, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_024769 ICTV: 202305601 ViralZone: genus, family

Scientific Name	Meleagrid alphaherpesvirus 1 [TAX:37108]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Mardivirus; Mardivirus meleagridalpha1
RefSeq	NC_002641 Meleagrid herpesvirus 1, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_002641 ICTV: 202301421 ViralZone: genus, family

Scientific Name	Mumps virus strain L-Zagreb [TAX:301186]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Rubulavirinae; Orthorubulavirus; Orthorubulavirus parotitidis; Mumps orthorubulavirus; Mumps virus genotype N
GenBank	AY685920 Mumps virus strain L-Zagreb vaccine strain, complete genome. AY685921 Mumps virus strain L-Zagreb master seed, complete genome.
Evidence	Literature
Reference	Beck, M., Welsz-Malecek, R., Mesko-Prejac, M., Radman, V., Juzbasic, M., Rajninger-Miholic, M., ... & Stainer, D. W. (1989). Mumps vaccine L-Zagreb, prepared in chick fibroblasts. I. Production and field trials. Journal of biological standardization, 17(1), 85-90.
DBLINKS	ViralZone: family, genus

Scientific Name	Newcastle disease virus B1 [TAX:139270]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Orthoavulavirus javaense; avian paramyxovirus 1
GenBank	AF309418 Newcastle disease virus B1, complete genome.
Evidence	Literature
Reference	PMID: 1466491
Authors	Ahmad J, Sharma JM
Title	Evaluation of a modified-live virus vaccine administered in ovo to protect chickens against Newcastle disease.
Journal	Am J Vet Res. 1992 Nov;53(11):1999-2004.
DBLINKS	ViralZone: family, genus

Scientific Name	Orivirus A [TAX:2170052]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Orivirus; Orivirus aoroshaza
GenBank	KM203656 Orivirus A strain chicken/Pf-CHK1/2013/HUN, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Parrot bornavirus 1 [TAX:1548714]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Bornaviridae; Orthobornavirus; Orthobornavirus alphapsittaciforme
RefSeq	NC_039189 Parrot bornavirus 1 strain M25 N protein (N), X protein (X), P protein (P), matrix protein (M), glycoprotein (G), and viral polymerase (L) genes, complete cds.
Evidence	Literature
Reference	PMID: 27100150
Authors	Piepenbring AK, Enderlein D, Herzog S, Al-Ibadi B, Heffels-Redmann U, Heckmann J, Lange-Herbst H, Herden C, Lierz M
Title	Parrot Bornavirus (PaBV)-2 isolate causes different disease patterns in cockatiels than PaBV-4.
Journal	Avian Pathol. 2016;45(2):156-68.
Comment	Culture cell line: CEC-32
DBLINKS	KEGG BRITE: NC_039189 ViralZone: family, genus

Scientific Name	Parrot bornavirus 4 [TAX:1548718]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Bornaviridae; Orthobornavirus; Orthobornavirus alphapsittaciforme
RefSeq	NC_030688 Parrot bornavirus 4, complete genome.
Evidence	Literature
Reference	PMID: 27100150
Authors	Piepenbring AK, Enderlein D, Herzog S, Al-Ibadi B, Heffels-Redmann U, Heckmann J, Lange-Herbst H, Herden C, Lierz M
Title	Parrot Bornavirus (PaBV)-2 isolate causes different disease patterns in cockatiels than PaBV-4.
Journal	Avian Pathol. 2016;45(2):156-68.
Comment	Culture cell line: CEC-32
DBLINKS	KEGG BRITE: NC_030688 ICTV: 202301557 ViralZone: family, genus

Scientific Name	Paslahepevirus balayani [TAX:1678143]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Hepelivirales; Hepeviridae; Orthohepevirinae; Paslahepevirus
RefSeq	NC_074955 Paslahepevirus balayani nonstructural protein and structural viral protein genes, complete cds. NC_076565 Paslahepevirus balayani isolate AlgSwe2012, partial genome. NC_076592 Paslahepevirus balayani isolate little egret/kocsag02/2014/HUN, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_074955 NC_076565 NC_076592 ICTV: 202313887, 202313885, 202303665 ViralZone: genus, family

Scientific Name	Pixuna virus [TAX:60876]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus; Alphavirus pixuna
RefSeq	NC_038673 Pixuna virus strain Pixuna BeAr 35645, complete genome.
Evidence	Literature
Reference	PMID: 962587
Authors	Jahrling PB, Navarro E, Scherer WF
Title	Interferon induction and sensitivity as correlates to virulence of Venezuelan encephalitis viruses for hamsters.
Journal	Arch Virol. 1976;51(1-2):23-35.
Comment	Culture cell line: baby hamster kidney-21 cells, chicken-embryonic cell(CEC cells)
Evidence	Literature
Reference	PMID: 9886206
Authors	Kinney RM, Pfeffer M, Tsuchiya KR, Chang GJ, Roehrig JT
Title	Nucleotide sequences of the 26S mRNAs of the viruses defining the Venezuelan equine encephalitis antigenic complex.
Journal	Am J Trop Med Hyg. 1998 Dec;59(6):952-64.
Comment	Culture cell line: baby hamster kidney-21 cells, chicken-embryonic cell(CEC cells)
DBLINKS	KEGG BRITE: NC_038673 ICTV: 202305101 ViralZone: family, genus

Scientific Name	Reticuloendotheliosis virus [TAX:11636]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Gammaretrovirus aviretend
RefSeq	NC_006934 Reticuloendotheliosis virus strain HA9901 from China, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_006934 ICTV: 202305020 ViralZone: genus, family

Scientific Name	Rotavirus D chicken/05V0049/DEU/2005 [TAX:884200]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus deltagastroenteritidis; Rotavirus D
RefSeq	NC_014511 Rotavirus D chicken/05V0049/DEU/2005 segment 1, complete genome. NC_014512 Rotavirus D chicken/05V0049/DEU/2005 segment 2, complete genome. NC_014513 Rotavirus D chicken/05V0049/DEU/2005 segment 3, complete genome. NC_014514 Rotavirus D chicken/05V0049/DEU/2005 segment 4, complete genome. NC_014515 Rotavirus D chicken/05V0049/DEU/2005 segment 5, complete genome. NC_014516 Rotavirus D chicken/05V0049/DEU/2005 segment 6, complete genome. NC_014517 Rotavirus D chicken/05V0049/DEU/2005 segment 7, complete genome. NC_014518 Rotavirus D chicken/05V0049/DEU/2005 segment 8, complete genome. NC_014519 Rotavirus D chicken/05V0049/DEU/2005 segment 9, complete genome. NC_014520 Rotavirus D chicken/05V0049/DEU/2005 segment 10, complete genome. NC_014521 Rotavirus D chicken/05V0049/DEU/2005 segment 11, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_014511 NC_014512 NC_014513 NC_014514 NC_014515 NC_014516 NC_014517 NC_014518 NC_014519 NC_014520 NC_014521 ICTV: 202304908 ViralZone: family, genus

Scientific Name	Rotavirus F chicken/03V0568/DEU/2003 [TAX:994994]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus phigastroenteritidis; Rotavirus F
RefSeq	NC_021625 Rotavirus F chicken/03V0568/DEU/2003 segment 1, complete sequence. NC_021626 Rotavirus F chicken/03V0568/DEU/2003 segment 2, complete sequence. NC_021627 Rotavirus F chicken/03V0568/DEU/2003 segment 9, complete sequence. NC_021628 Rotavirus F chicken/03V0568/DEU/2003 segment 8, complete sequence. NC_021629 Rotavirus F chicken/03V0568/DEU/2003 segment 10, complete sequence. NC_021630 Rotavirus F chicken/03V0568/DEU/2003 segment 4, complete sequence. NC_021631 Rotavirus F chicken/03V0568/DEU/2003 segment 3, complete sequence. NC_021632 Rotavirus F chicken/03V0568/DEU/2003 segment 5, complete sequence. NC_021633 Rotavirus F chicken/03V0568/DEU/2003 segment 7, complete sequence. NC_021634 Rotavirus F chicken/03V0568/DEU/2003 segment 11, complete sequence. NC_021635 Rotavirus F chicken/03V0568/DEU/2003 segment 6, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_021625 NC_021626 NC_021627 NC_021628 NC_021629 NC_021630 NC_021631 NC_021632 NC_021633 NC_021634 NC_021635 ICTV: 202304910 ViralZone: family, genus

Scientific Name	Rotavirus G chicken/03V0567/DEU/2003 [TAX:994995]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Rotavirus; Rotavirus gammagastroenteritidis; Rotavirus G
RefSeq	NC_021580 Rotavirus G chicken/03V0567/DEU/2003 segment 2, complete sequence. NC_021581 Rotavirus G chicken/03V0567/DEU/2003 segment 3, complete sequence. NC_021582 Rotavirus G chicken/03V0567/DEU/2003 segment 9, complete sequence. NC_021583 Rotavirus G chicken/03V0567/DEU/2003 segment 5, complete sequence. NC_021584 Rotavirus G chicken/03V0567/DEU/2003 segment 8, complete sequence. NC_021585 Rotavirus G chicken/03V0567/DEU/2003 segment 7, complete sequence. NC_021586 Rotavirus G chicken/03V0567/DEU/2003 segment 10, complete sequence. NC_021587 Rotavirus G chicken/03V0567/DEU/2003 segment 11, complete sequence. NC_021588 Rotavirus G chicken/03V0567/DEU/2003 segment 6, complete sequence. NC_021589 Rotavirus G chicken/03V0567/DEU/2003 segment 4, complete sequence. NC_021590 Rotavirus G chicken/03V0567/DEU/2003 segment 1, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_021580 NC_021581 NC_021582 NC_021583 NC_021584 NC_021585 NC_021586 NC_021587 NC_021588 NC_021589 NC_021590 ICTV: 202304911 ViralZone: family, genus

Scientific Name	Rous sarcoma virus [TAX:11886]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Alpharetrovirus avirousar
RefSeq	NC_001407 Rous sarcoma virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001407 ICTV: 202304988 ViralZone: genus, family

Scientific Name	Sicinivirus A [TAX:1755588]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Sicinivirus; Sicinivirus ahiberni
RefSeq	NC_023861 Sicinivirus A strain UCC001, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_023861 ICTV: 202302063 ViralZone: genus, family

Scientific Name	sicinivirus A1 [TAX:2773315]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Sicinivirus; Sicinivirus ahiberni; Sicinivirus A
RefSeq	NC_028380 Sicinivirus A1 isolate JSY, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26461027
Authors	Zhou H, Zhu S, Quan R, Wang J, Wei L, Yang B, Xu F, Wang J, Chen F, Liu J
Title	Identification and Genome Characterization of the First Sicinivirus Isolate from Chickens in Mainland China by Using Viral Metagenomics.
Journal	PLoS One. 2015;10(10):e0139668.
DBLINKS	KEGG BRITE: NC_028380 ICTV: 202302063 ViralZone: genus, family

Scientific Name	Sitiawan virus [TAX:93923]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus tembusu; Tembusu virus
GenBank	JX477686 Sitiawan virus, complete genome.
Evidence	Literature
Reference	PMID: 22764316
Authors	Liu P, Lu H, Li S, Moureau G, Deng YQ, Wang Y, Zhang L, Jiang T, de Lamballerie X, Qin CF, Gould EA, Su J, Gao GF
Title	Genomic and antigenic characterization of the newly emerging Chinese duck egg-drop syndrome flavivirus: genomic comparison with Tembusu and Sitiawan viruses.
Journal	J Gen Virol. 2012 Oct;93(Pt 10):2158-70.
Comment	Source of isolation: Broiler chicken
DBLINKS	ViralZone: genus

Scientific Name	Snowshoe hare virus [TAX:11580]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus; Orthobunyavirus khatangaense
RefSeq	NC_055196 Snowshoe hare virus L polyprotein (L) gene, complete cds. NC_055197 Snowshoe hare virus segment M G1/G2 membrane polyprotein gene, complete cds. NC_055198 Snowshoe hare virus segment small, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_055196 NC_055197 NC_055198 ICTV: 202306371 ViralZone: genus, family

Scientific Name	Sunguru virus [TAX:1491491]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Sunrhavirus; Sunrhavirus sunguru
RefSeq	NC_025401 Sunguru virus isolate Ug#41, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025401 ICTV: 202307124 ViralZone: genus, family

Scientific Name	tremovirus A1 [TAX:2871093]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Heptrevirinae; Tremovirus; Tremovirus aetremori; Tremovirus A
RefSeq	NC_003990 Avian encephalomyelitis virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003990 ICTV: 202302069 ViralZone: family, genus